Difference between revisions of "Best Practice Handbook"
From reBiND Documentation
LornaMorris (talk | contribs) (→System Installation and Administration) |
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*** Import from XML file system | *** Import from XML file system | ||
*** Connect to BioCASE and upload XML | *** Connect to BioCASE and upload XML | ||
| − | ** Validation and Corrections ([http://rebind.bgbm.org/first_screenshots | + | ** Validation and Corrections ([http://rebind.bgbm.org/first_screenshots An overview of the reBiND interface showing correction and validation]) |
*** Validation | *** Validation | ||
*** Running the automated correction | *** Running the automated correction | ||
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**** Add additional modules | **** Add additional modules | ||
** Reviewing the XML file | ** Reviewing the XML file | ||
| − | ** Entering metadata ([http://rebind.bgbm.org/metadata_capture | + | ** Entering metadata ([http://rebind.bgbm.org/metadata_capture An overview of the different forms in the Metadata Editor tool]) |
** Publishing the dataset | ** Publishing the dataset | ||
Revision as of 12:03, 12 June 2014
Contents
Introduction
- About reBiND
- How to use this manual
System Installation and Administration
- Installation
- Installing BioCASe Provider Software
- Installing eXist
- Installing reBiND Framework
- ReBiND Framework Configuration Steps Configuring eXist/reBiND Framework
- Administration
- Architecture-Concept#Uploading_the_Data_to_eXist Management of reBiND data in the eXist database
- Rights management
- Documentation of Correction Modules
- Writing Custom Correction Modules
- Using a different XML format
- Using a different metadata format
Data Archiving
- Workflow
- Data Preparation
- Prepare the content for ABCD mapping: resolve abbreviations, add units, concatenate atomised scientific name, additional information from data documentation, add metadata, denormalise
- ABCD Mapping (see BioCASE documentation) plus additional examples
- XML Export from BioCASE provider software (mention other like Pentaho Kettle?)
- Import to reBiND Framework
- Import from XML file system
- Connect to BioCASE and upload XML
- Validation and Corrections (An overview of the reBiND interface showing correction and validation)
- Validation
- Running the automated correction
- Default correction (selecting existing correction module)
- Modifiy corrections
- Add additional modules
- Reviewing the XML file
- Entering metadata (An overview of the different forms in the Metadata Editor tool)
- Publishing the dataset
- Data Preparation
Data Access and Search
- Search via reBiND web interface
- Search via Biodiversity networks (GBIF)
Case Studies
- Case studies with single data sets from different providers
- General observations
Data Rescue (outdated software and hardware)
- software
- Identifying Unknown File Formats
- Conversion for selected file formats
- DataPerfect
- Paradox
- dBase
- Harvard Graphics
- Word 3 for DOS
- Excel to Access database
- Document new data formats for others
- hardware
- 3.5" Floppies
- 5.25 " Floppies
Supporting data preparation
- Software Products
- Data Splitter
- Character Encoding Correcter
- Stand-alone Correction Manager
- supporting procedures
Technical Background
- eXist
- XQuery
- ABCD
- EML
