Difference between revisions of "Best Practice Handbook"
From reBiND Documentation
(→Data Archiving (Information for content administrators and contributing scientists)) |
|||
| (119 intermediate revisions by 2 users not shown) | |||
| Line 1: | Line 1: | ||
| + | =reBiND Best Practice Handbook= | ||
| + | |||
==Introduction== | ==Introduction== | ||
| − | * | + | * [[About reBiND]] |
| − | * | + | * [[Introduction|How to use this manual]] |
| − | == | + | ==The reBiND workflow== |
| − | + | * [[Overview_rebind_workflow#Overview_of_the_reBiND_workflow|An overview of the reBiND pipeline]] | |
| − | |||
| − | |||
| − | * [[ | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| + | ==System Installation and Administration (Technical information for administrators and IT specialists)== | ||
| + | * [[Installation]] | ||
| + | * [[Administration]] | ||
| + | * [[Data Rescue - outdated software and hardware]] | ||
| + | ==Data Archiving (Information for content administrators and contributing scientists) == | ||
| − | + | * [[Data_preparation|Data Preparation]] | |
| − | + | * [[Creating_new_rebind_project|Creating a new project]] | |
| − | + | * [[Data_upload_to_rebind_framework|Uploading data to the reBiND data portal - files less than 1000 ABCD units]] | |
| − | ** | + | * [[Exporting_XML_files_from_BPS| Uploading data to the reBiND data portal - files greater than 1000 ABCD units]] |
| − | * | + | * [[Validation_and_Corrections |Validation and Corrections]] |
| − | + | * [[Manual_review_of_data |Manual review of the data file]] | |
| − | + | * [[Entering_metadata |Entering metadata]] | |
| − | + | * [[Publishing_and_searching_the_data |Publishing and searching the data]] | |
| − | |||
| − | * | ||
| − | * | ||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | * | ||
| − | * | ||
| − | |||
| − | |||
| − | |||
| − | |||
==Case Studies== | ==Case Studies== | ||
| − | * Case studies with single data sets from different providers | + | * [[Case studies with single data sets from different providers ]] |
| − | |||
| − | == | + | == Supporting data preparation == |
| − | + | * [[Supporting_data_preparation_software|Software Products]] | |
| − | + | * [[Supporting procedures|Supporting data preparation procedures]] | |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| + | ==Technical Background== | ||
| + | *[[eXist_and_xquery|eXist and xquery]] | ||
| + | *[[Ecologial Metadata Language]] | ||
| + | *[[ABCD Access to Biological Collection Data, Standard]] | ||
| − | == | + | ==Glossary== |
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| − | |||
| + | * [[Glossary|A description of some of the terms used in this manual]] | ||
| − | == | + | ==References== |
| − | + | ||
| − | + | * Güntsch, A., Fichtmüller, D., Kirchhoff, A. & Berendsohn, W.G.: Efficient rescue of threatened biodiversity data using reBiND-workflows. In: Plant Biosystems, 146(4) (2012), S. 752-755, DOI:10.1080/11263504.2012.740086 | |
| − | |||
| − | * | ||
| + | * The BioCASE Provider Software Documentation: http://wiki.bgbm.org/bps/index.php/Main_Page | ||
| − | + | * BioCASE Biological Collection Access Service: http://www.biocase.org/ | |
| − | + | * ABCD Schema (Access ot Biological Collection Data); ABCD 2.0 Concepts: http://wiki.tdwg.org/twiki/bin/view/ABCD/AbcdConcepts | |
| − | + | * GBIF (Global Biodiversity Information Facility): http://www.gbif.org/ | |
Latest revision as of 15:57, 14 January 2015
Contents
- 1 reBiND Best Practice Handbook
- 1.1 Introduction
- 1.2 The reBiND workflow
- 1.3 System Installation and Administration (Technical information for administrators and IT specialists)
- 1.4 Data Archiving (Information for content administrators and contributing scientists)
- 1.5 Case Studies
- 1.6 Supporting data preparation
- 1.7 Technical Background
- 1.8 Glossary
- 1.9 References
reBiND Best Practice Handbook
Introduction
The reBiND workflow
System Installation and Administration (Technical information for administrators and IT specialists)
Data Archiving (Information for content administrators and contributing scientists)
- Data Preparation
- Creating a new project
- Uploading data to the reBiND data portal - files less than 1000 ABCD units
- Uploading data to the reBiND data portal - files greater than 1000 ABCD units
- Validation and Corrections
- Manual review of the data file
- Entering metadata
- Publishing and searching the data
Case Studies
Supporting data preparation
Technical Background
Glossary
References
- Güntsch, A., Fichtmüller, D., Kirchhoff, A. & Berendsohn, W.G.: Efficient rescue of threatened biodiversity data using reBiND-workflows. In: Plant Biosystems, 146(4) (2012), S. 752-755, DOI:10.1080/11263504.2012.740086
- The BioCASE Provider Software Documentation: http://wiki.bgbm.org/bps/index.php/Main_Page
- BioCASE Biological Collection Access Service: http://www.biocase.org/
- ABCD Schema (Access ot Biological Collection Data); ABCD 2.0 Concepts: http://wiki.tdwg.org/twiki/bin/view/ABCD/AbcdConcepts
- GBIF (Global Biodiversity Information Facility): http://www.gbif.org/
