Best Practice Handbook: Difference between revisions
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=reBiND Best Practice Handbook= | |||
==Introduction== | ==Introduction== | ||
* About reBiND | * [[About reBiND]] | ||
* [[Introduction|How to use this manual]] | * [[Introduction|How to use this manual]] | ||
| Line 14: | Line 16: | ||
* [[Data_preparation|Data Preparation]] | * [[Data_preparation|Data Preparation]] | ||
* [[ | * [[Creating_new_rebind_project|Creating a new project]] | ||
* [[Data_upload_to_rebind_framework|Uploading data to the reBiND data portal - files less than 1000 ABCD units]] | |||
* [[Exporting_XML_files_from_BPS| Uploading data to the reBiND data portal - files greater than 1000 ABCD units]] | |||
* [[Validation_and_Corrections |Validation and Corrections]] | * [[Validation_and_Corrections |Validation and Corrections]] | ||
* | * [[Manual_review_of_data |Manual review of the data file]] | ||
* [[Entering_metadata |Entering metadata]] | * [[Entering_metadata |Entering metadata]] | ||
* [[Publishing_and_searching_the_data |Publishing and searching the data]] | * [[Publishing_and_searching_the_data |Publishing and searching the data]] | ||
==Case Studies== | ==Case Studies== | ||
* Case studies with single data sets from different providers | * [[Case studies with single data sets from different providers ]] | ||
== Supporting data preparation == | == Supporting data preparation == | ||
* [[Supporting_data_preparation_software|Software Products]] | * [[Supporting_data_preparation_software|Software Products]] | ||
* [[Supporting procedures| | * [[Supporting procedures|Supporting data preparation procedures]] | ||
==Technical Background== | ==Technical Background== | ||
*[[eXist_and_xquery|eXist and xquery]] | *[[eXist_and_xquery|eXist and xquery]] | ||
*[[Ecologial Metadata Language]] | *[[Ecologial Metadata Language]] | ||
*[[ABCD Access to Biological Collection Data, Standard]] | |||
==Glossary== | ==Glossary== | ||
* [[ | * [[Glossary|A description of some of the terms used in this manual]] | ||
==References== | ==References== | ||
* Güntsch, A., Fichtmüller, D., Kirchhoff, A. & Berendsohn, W.G.: Efficient rescue of threatened biodiversity data using reBiND-workflows. In: Plant Biosystems, 146(4) (2012), S. 752-755, DOI:10.1080/11263504.2012.740086 | |||
* The BioCASE Provider Software Documentation: http://wiki.bgbm.org/bps/index.php/Main_Page | |||
* BioCASE Biological Collection Access Service: http://www.biocase.org/ | |||
* ABCD Schema (Access ot Biological Collection Data); ABCD 2.0 Concepts: http://wiki.tdwg.org/twiki/bin/view/ABCD/AbcdConcepts | |||
* GBIF (Global Biodiversity Information Facility): http://www.gbif.org/ | |||
Latest revision as of 15:57, 14 January 2015
reBiND Best Practice Handbook
Introduction
The reBiND workflow
System Installation and Administration (Technical information for administrators and IT specialists)
Data Archiving (Information for content administrators and contributing scientists)
- Data Preparation
- Creating a new project
- Uploading data to the reBiND data portal - files less than 1000 ABCD units
- Uploading data to the reBiND data portal - files greater than 1000 ABCD units
- Validation and Corrections
- Manual review of the data file
- Entering metadata
- Publishing and searching the data
Case Studies
Supporting data preparation
Technical Background
Glossary
References
- Güntsch, A., Fichtmüller, D., Kirchhoff, A. & Berendsohn, W.G.: Efficient rescue of threatened biodiversity data using reBiND-workflows. In: Plant Biosystems, 146(4) (2012), S. 752-755, DOI:10.1080/11263504.2012.740086
- The BioCASE Provider Software Documentation: http://wiki.bgbm.org/bps/index.php/Main_Page
- BioCASE Biological Collection Access Service: http://www.biocase.org/
- ABCD Schema (Access ot Biological Collection Data); ABCD 2.0 Concepts: http://wiki.tdwg.org/twiki/bin/view/ABCD/AbcdConcepts
- GBIF (Global Biodiversity Information Facility): http://www.gbif.org/
