Difference between revisions of "Best Practice Handbook"
From reBiND Documentation
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==System Installation and Administration== | ==System Installation and Administration== | ||
| − | * Installing BioCASe Provider Software | + | * Installation |
| − | * Installing eXist | + | ** Installing BioCASe Provider Software |
| − | * Installing reBiND Framework | + | ** Installing eXist |
| − | * [[ReBiND Framework Configuration Steps|Configuring eXist/reBiND Framework]] | + | ** Installing reBiND Framework |
| − | * Using a custom data format (?) | + | ** [[ReBiND Framework Configuration Steps|Configuring eXist/reBiND Framework]] |
| − | * Documentation of [[Correction Modules]] | + | * Administration |
| − | * Writing Custom Correction Modules | + | ** Using a custom data format (?) |
| − | * Using a different metadata format | + | ** Documentation of [[Correction Modules]] |
| + | ** Writing Custom Correction Modules | ||
| + | ** Using a different metadata format | ||
==Data Archiving== | ==Data Archiving== | ||
Revision as of 14:12, 11 June 2014
Contents
Introduction
- about reBiND
- how to use this book
System Installation and Administration
- Installation
- Installing BioCASe Provider Software
- Installing eXist
- Installing reBiND Framework
- Configuring eXist/reBiND Framework
- Administration
- Using a custom data format (?)
- Documentation of Correction Modules
- Writing Custom Correction Modules
- Using a different metadata format
Data Archiving
- workflow
- Data Preparation
- prepare the content for ABCD mapping: resolve abbreviations, add units, concatenate atomised scientific name, additional information from data documentation, add metadata, denormalise
- ABCD Mapping (see BioCASE documentation) plus additional examples
- XML Export from BioCASE provider software (mention other like Pentaho Kettle?)
- import to reBiND Framework
- import from XML file system
- Connect to BioCASE and upload XML
- Validation and Corrections
- Validation
- Running the automated correction
- default correction (selecting existing correction module)
- modifiy corrections
- add additional modules
- Reviewing the XML file
- Entering metadata
- publishing the dataset
- Data Preparation
Data Access and Search
- Search via reBiND web interface
- Search via Biodiversity networks (GBIF)
Case Studies
- Case studies with single data sets from different providers
- General observations
Data Rescue (outdated software and hardware)
- software
- Identifying Unknown File Formats
- Conversion for selected file formats
- DataPerfect
- Paradox
- dBase
- Harvard Graphics
- Word 3 for DOS
- Excel to Access database
- Document new data formats for others
- hardware
- 3.5" Floppies
- 5.25 " Floppies
supporting data preparation
- Software Products
- Data Splitter
- Character Encoding Correcter
- Stand-alone Correction Manager
- supporting procedures
Technical Background
- eXist
- XQuery
- ABCD
- EML
