Best Practice Handbook: Difference between revisions

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*workflow
*workflow
** Data Preparation
** Data Preparation
***content: notes: content - resolve abbreviations, add units, concatenate atomised scientific name, additional information from data documentation, add metadata
***prepare the content for ABCD mapping: resolve abbreviations, add units, concatenate atomised scientific name, additional information from data documentation, add metadata, denormalise
***ABCD Mapping
***ABCD Mapping (see BioCASE documentation) plus additional examples
** XML Export
** XML Export
** Import to reBiND Framework
** Import to reBiND Framework

Revision as of 10:46, 8 April 2014

Introduction

  • about reBiND
  • how to use this book

System Installation

  • Installing BioCASe Provider Software
  • Installing eXist
  • Installing reBiND Framework
  • Configuring eXist/reBiND Framework
  • Using a custom data format
  • Using the Correction Tool
  • Writing Custom Correction Modules
  • Using a different metadata format

Technical Background

  • eXist
  • XQuery
  • ABCD
  • EML

Data Archiving

  • workflow
    • Data Preparation
      • prepare the content for ABCD mapping: resolve abbreviations, add units, concatenate atomised scientific name, additional information from data documentation, add metadata, denormalise
      • ABCD Mapping (see BioCASE documentation) plus additional examples
    • XML Export
    • Import to reBiND Framework
    • Run Corrections
    • data review by the scientist
    • enter metadata
    • publish

Best Practice Documentation


Data Rescue, Preparation

Case Studies

Related Software Products

  • Data Splitter
  • Character Encoding Correcter
  • Stand-alone Correction Manager

Glossary

References