Difference between revisions of "Task Force Biobank Procedures"
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*Performing an experiment on stabilizers for RNA during shipment | *Performing an experiment on stabilizers for RNA during shipment | ||
*As part of [https://www.synthesys.info/ SYNTHESYS+] Work Package 3, performing a landscape analysis of existing biobank standard operating procedures | *As part of [https://www.synthesys.info/ SYNTHESYS+] Work Package 3, performing a landscape analysis of existing biobank standard operating procedures | ||
| + | *Serving on the EBP [https://www.earthbiogenome.org/subcommittee-sample-collection-processing Scientific Subcommittee: Sample Collection and Processing]. | ||
=Accomplishments= | =Accomplishments= | ||
Revision as of 19:29, 25 June 2020
Contents
Program of Work
Improve biobank standard operating procedures and sample preservation by:
- Conducting and publishing results on targeted sample preservation studies
- Identifying and filling gaps in best practices related to the management of genomic samples
Current Activities
- Performing a long-term experiment on fixed animal tissue preservation; testing common preservatives across wider range of taxa
- Currently testing Qiagen RNAlater, RNAlater surrogate, Qiagen AllProtect, ethanol, propylene glycol, DESS (DMSO/NaCl), and tissue lysis buffer
- Performing an experiment on stabilizers for RNA during shipment
- As part of SYNTHESYS+ Work Package 3, performing a landscape analysis of existing biobank standard operating procedures
- Serving on the EBP Scientific Subcommittee: Sample Collection and Processing.
Accomplishments
- Contributed to the ISBER, 2018, ISBER Best Practices - Recommendations for Biorepositories
- Reviewed the collection, processing, storage and transportation of animal and plant genetic resources for inclusion in ISO biobanking standard (ISO/AWI 20387).
Related Resources
- Mulcahy DG, Macdonald KS III, Brady SG, Meyer C, Barker KB, Coddington J. 2016. Greater than X kb: a quantitative assessment of preservation conditions on genomic DNA quality, and a proposed standard for genome-quality DNA. PeerJ 4:e2528 https://doi.org/10.7717/peerj.2528
- Zimkus, Breda & Hassapakis, Craig & Houck, Marlys. (2018). Integrating current methods for the preservation of amphibian genetic resources and viable tissues to achieve best practices for species conservation. Amphibian and Reptile Conservation. 12. 1-27
Getting Involved
Email us at info@ggbn.org to:
- Join the Task Force
- Volunteer to lead an experiment
Current Members
- Jonas Astrin, Zoological Research Museum A. Koenig (2016-present), Chair
- Katie Barker, Smithsonian National Museum of Natural History (2016-present)
- Mike Bruford, Cardiff University (2017-present)
- Marta Castelhano, Cornell University (2016-present)
- Jon Coddington, Smithsonian National Museum of Natural History (2016-present)
- Dan Distel, Ocean Genome Legacy (2016-present)
- Gabi Droege, Botanic Garden and Botanical Museum Berlin-Dahlem (2016-present)
- Andrew Iloh, Biodiversity and Climate Research, Biotechnology Research Center (2016-present)
- Virág Krizsik, Hungarian Natural History Museum (2016-present)
- Kim Labuschagne, National Zoological Gardens (2016-present)
- Jackie Mackenzie-Dodds, Natural History Museum London (2016-present)
- Li Qiyuan, Beijing Genomics Institute (2016-present)
- Eva Sehr, Austrian Institute of Technology (2016-present)
- Julie Strand, Randers Regnskov Tropical Zoo (2016-present)
- Michal Vinkler, Charles University in Prague (2016-present)
- Breda Zimkus, Museum of Comparative Zoology Harvard University (2016-present)
