Difference between revisions of "Indexed fields"

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(→‎DarwinCore Archive)
(→‎GGBN extensions)
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==GGBN extensions==
 
==GGBN extensions==
 +
===GGBN Amplification===
 
amplificationDate: http://data.ggbn.org/schemas/ggbn/terms/amplificationDate<BR>
 
amplificationDate: http://data.ggbn.org/schemas/ggbn/terms/amplificationDate<BR>
 
geneticAccessionNumber: http://data.ggbn.org/schemas/ggbn/terms/geneticAccessionNumber<BR>
 
geneticAccessionNumber: http://data.ggbn.org/schemas/ggbn/terms/geneticAccessionNumber<BR>
 
geneticAccessionURI: http://data.ggbn.org/schemas/ggbn/terms/geneticAccessionURI<BR>
 
geneticAccessionURI: http://data.ggbn.org/schemas/ggbn/terms/geneticAccessionURI<BR>
 
BOLDProcessID: http://data.ggbn.org/schemas/ggbn/terms/BOLDProcessID<BR>
 
BOLDProcessID: http://data.ggbn.org/schemas/ggbn/terms/BOLDProcessID<BR>
 +
marker:http://data.ggbn.org/schemas/ggbn/terms/marker<BR><BR>
 +
 +
===GGBN Loan===
 
blockedUntil: http://data.ggbn.org/schemas/ggbn/terms/blockedUntil<BR>
 
blockedUntil: http://data.ggbn.org/schemas/ggbn/terms/blockedUntil<BR>
 
blocked:http://data.ggbn.org/schemas/ggbn/terms/blocked<BR>
 
blocked:http://data.ggbn.org/schemas/ggbn/terms/blocked<BR>
 
loanConditions:http://data.ggbn.org/schemas/ggbn/terms/loanConditions<BR>
 
loanConditions:http://data.ggbn.org/schemas/ggbn/terms/loanConditions<BR>
−
marker:http://data.ggbn.org/schemas/ggbn/terms/marker<BR><BR>
+
 
 +
===GGBN Preparation===
 
preparationType: http://data.ggbn.org/schemas/ggbn/terms/preparationType<BR>
 
preparationType: http://data.ggbn.org/schemas/ggbn/terms/preparationType<BR>
 
preparationDate: http://data.ggbn.org/schemas/ggbn/terms/preparationDate<BR>
 
preparationDate: http://data.ggbn.org/schemas/ggbn/terms/preparationDate<BR>
 
preparedBy: http://data.ggbn.org/schemas/ggbn/terms/preparedBy<BR>
 
preparedBy: http://data.ggbn.org/schemas/ggbn/terms/preparedBy<BR>
  
 +
===GGBN Preservation===
 
preservationType: http://data.ggbn.org/schemas/ggbn/terms/preservationType<BR>
 
preservationType: http://data.ggbn.org/schemas/ggbn/terms/preservationType<BR>
  
 +
===GGBN Material Sample Type===
 
concentration: http://data.ggbn.org/schemas/ggbn/terms/concentration<BR>
 
concentration: http://data.ggbn.org/schemas/ggbn/terms/concentration<BR>
 
concentrationunit: http://data.ggbn.org/schemas/ggbn/terms/concentrationUnit<BR>
 
concentrationunit: http://data.ggbn.org/schemas/ggbn/terms/concentrationUnit<BR>
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materialSampleType: http://data.ggbn.org/schemas/ggbn/terms/materialSampleType<BR>
 
materialSampleType: http://data.ggbn.org/schemas/ggbn/terms/materialSampleType<BR>
  
−
 
+
===GGBN Permit===
 
permitType: http://data.ggbn.org/schemas/ggbn/terms/permitType<BR>
 
permitType: http://data.ggbn.org/schemas/ggbn/terms/permitType<BR>
 
permitStatus: http://data.ggbn.org/schemas/ggbn/terms/permitStatus<BR>
 
permitStatus: http://data.ggbn.org/schemas/ggbn/terms/permitStatus<BR>
 
permitText: http://data.ggbn.org/schemas/ggbn/terms/permitStatusQualifier<BR>
 
permitText: http://data.ggbn.org/schemas/ggbn/terms/permitStatusQualifier<BR>

Revision as of 15:29, 3 February 2016

ABCD

Gathering Agent

GatheringAgent/Person/FullName
GatheringAgent/AgentText
GatheringAgent@sequence

Agents/AgentText
Agents/GatheringAgentsText

Gathering coordinates

SiteCoordinates/CoordinatesLatLong/LatitudeDecimal
SiteCoordinates/CoordinatesLatLong/LongitudeDecimal
SiteCoordinates/CoordinatesLatLong/VerbatimLatitude
SiteCoordinates/CoordinatesLatLong/VerbatimLongitude
SiteCoordinates/CoordinatesLatLong/CoordinateErrorDistanceInMeters
SiteCoordinates/CoordinatesLatLong/SpatialDatum
SiteCoordinates/CoordinateMethod

Gathering details

Gathering/Country/ISO3166Code
Gathering/Country/NameDerived
Gathering/Country/Name
Gathering/LocalityText
Gathering/EstablishmentMeans
Gathering/Depth/MeasurementOrFactAtomised/Accuracy
Gathering/Depth/MeasurementOrFactAtomised/UpperValue
Gathering/Depth/MeasurementOrFactAtomised/LowerValue
Gathering/Depth/MeasurementOrFactText
Gathering/Altitude/MeasurementOrFactAtomised/UpperValue
Gathering/Altitude/MeasurementOrFactAtomised/LowerValue
Gathering/Altitude/MeasurementOrFactAtomised/Accuracy
Gathering/Altitude/MeasurementOrFactText
Gathering/DateTime/ISODateTimeBegin
Gathering/DateTime/ISODateTimeEnd
Gathering/DateTime/DateText
NamedArea/AreaName


Stratigraphy

  • ChronostratigraphicTerms, BiostratigraphicTerms, LithostratigraphicTerms

Gathering/Stratigraphy/StratigraphyText
ChronostratigraphicTerm/Comment
ChronostratigraphicTerm/Domain
ChronostratigraphicTerm/SourceName
ChronostratigraphicTerm/SourceNameVersion
ChronostratigraphicTerm/Term

BiostratigraphicTerm/Comment
BiostratigraphicTerm/Domain
BiostratigraphicTerm/SourceName
BiostratigraphicTerm/SourceNameVersion
BiostratigraphicTerm/Term

LithostratigraphicTerm/Comment
LithostratigraphicTerm/Domain
LithostratigraphicTerm/SourceName
LithostratigraphicTerm/SourceNameVersion
LithostratigraphicTerm/Term

  • (UnitExtension/UnitHostRock/HostRockText, UnitExtension/UnitHostRock/HostRockStratigraphy/ChronostratigraphicAttributions/ChronostratigraphicAttribution, UnitExtension/UnitHostRock/HostRockStratigraphy/LithostratigraphicAttributions/LithostratigraphicAttribution, UnitExtension/UnitHostRock/HostRockStratigraphy/BiostratigraphicAttribution)

ChronostratigraphicAttribution/ChronoStratigraphicDivision
ChronostratigraphicAttribution/ChronostratigraphicName

LithostratigraphicAttribution/LithostratigraphicDivision
LithostratigraphicAttribution/LithostratigraphicName

BiostratigraphicAttribution/BiostratigraphicDivision
BiostratigraphicAttribution/BiostratigraphicName


Higher taxon

HigherTaxon/HigherTaxonName
HigherTaxon/HigherTaxonRank

Identification

Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString
Identification/Result/TaxonIdentified/InformalNameString
Identification/Result/Extension/MineralRockIdentified/ClassifiedName/FullScientificNameString
Identification/PreferredFlag
Identification/Date/ISODateTimeBegin
Identification/Date/ISODateTimeEnd
Identification/Date/DateText
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/GenusOrMonomial
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/SubGenus
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/InfraspecificEpithet
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/SubspeciesEpithet
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/FirstEpithet
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/SpeciesEpithet
Identifier/PersonName/FullName
Identifiers/IdentifiersText

Measurements or facts

  • abcd 2.1
    • abcd21:Unit/abcd21:MeasurementsOrFacts/abcd21:MeasurementOrFact
    • abcd21:SpecimenUnit/abcd21:SpecimenMeasurementsOrFacts/abcd21:SpecimenMeasurementOrFact
    • abcd21:SiteMeasurementsOrFacts/abcd21:SiteMeasurementOrFact
  • abcd 2.06
    • abcd:Unit/abcd:MeasurementsOrFacts/abcd:MeasurementOrFact
    • abcd:SiteMeasurementsOrFacts/abcd:SiteMeasurementOrFact


measurementOrFactStr=MeasurementOrFact or SiteMeasurementOrFact or SpecimenMeasurementOrFact

measurementOrFactStr/MeasurementOrFactAtomised/MeasuredBy
measurementOrFactStr/MeasurementOrFactAtomised/MeasurementDateTime
measurementOrFactStr/MeasurementOrFactAtomised/Duration
measurementOrFactStr/MeasurementOrFactAtomised/Method
measurementOrFactStr/MeasurementOrFactAtomised/Parameter
measurementOrFactStr/MeasurementOrFactAtomised/AppliesTo
measurementOrFactStr/MeasurementOrFactAtomised/LowerValue
measurementOrFactStr/MeasurementOrFactAtomised/UpperValue
measurementOrFactStr/MeasurementOrFactAtomised/UnitOfMeasurement
measurementOrFactStr/MeasurementOrFactAtomised/Accuracy
measurementOrFactStr/MeasurementOrFactAtomised/MeasurementOrFactReference
measurementOrFactStr/MeasurementOrFactAtomised/IsQuantitative
measurementOrFactStr/MeasurementOrFactText

Multimedia

  • abcd 2.1:MultiMediaObject
  • abcd 2.06: MultiMediaObject


MultiMediaObject/Format
MultiMediaObject/fileFormat
MultiMediaObject/ProductURI
MultiMediaObject/FileURI
Copyright/Text
TermsOfUse/Text
License/Text

Unit

Unit/RecordURI
Unit/CollectorsFieldNumber
Unit/RecordBasis
Unit/KindOfUnit
Unit/SourceInstitutionID
Unit/SourceID
Unit/UnitGUID
NomenclaturalTypeDesignation/NomenclaturalReference/TitleCitation
NomenclaturalTypeDesignation/TypeStatus
NomenclaturalTypeDesignation/VerificationNotes
NomenclaturalTypeDesignation/TypifiedName/FullScientificNameString

Sequences

Unit/Sequences/Sequence
Sequence/Database
Sequence/ID-in-Database

GGBN terms

  • abcd ggbn
    • UnitExtension/ggbn:GGBN/ggbn:ratioOfAbsorbance260_230
    • UnitExtension/ggbn:GGBN/ggbn:ratioOfAbsorbance260_280
    • UnitExtension/ggbn:GGBN/ggbn:concentration
    • UnitExtension/ggbn:GGBN/ggbn:qualityCheckDate
  • abcd dba
    • dna:DNASample/dna:Tissue
    • dna:DNASample/dna:Preservation
    • dna:DNASample/dna:ExtractionStaff
    • dna:DNASample/dna:ExtractionDate
    • dna:DNASample/dna:ExtractionMethod
    • dna:DNASample/dna:RatioOfAbsorbance260_230
    • dna:DNASample/dna:RatioOfAbsorbance260_280
    • dna:DNASample/dna:Concentration + unit
    • dna:DNASample/dna:Type
    • dna:DNASample/dna:QualityCheckDate


Amplification and accession number

  • UnitExtension/ggbn:GGBN/ggbn:Amplifications/ggbn:amplification
  • abcd ggbn
    • ggbn:amplification/ggbn:marker
    • ggbn:sequencing
    • ggbn:geneticAccession/ggbn:geneticAccessionNumber
    • ggbn:geneticAccession/ggbn:geneticAccessionNumberURI
    • ggbn:geneticAccession/ggbn:BOLDProcessID
  • abcd dna
    • dna:Amplification/dna:GeneticLocus
    • dna:Sequencing/dna:GenBankNumber
    • dna:Sequencing/dna:GenBankNumber-URI
  • abcd 2.06
    • Unit/SpecimenUnit/Accessions/AccessionNumber
  • abcd2.1
    • Unit/SpecimenUnit/Accessions/AccessionNumber
    • Unit/SpecimenUnit/Preparations/preparation/sampleDesignations/sampleDesignation

Preparation

  • Unit/abcd21:SpecimenUnit/abcd21:Preparations/abcd21:preparation

abcd21:preparation/abcd21:preparationType
abcd21:preparation/abcd21:preparationMaterials
abcd21:preparation/abcd21:preparationAgent/abcd21:Person/abcd21:FullName
abcd21:preparation/abcd21:preparationDate

Loan

Unit/SpecimenUnit/abcd21:Loan/abcd21:blockedUntil
Unit/SpecimenUnit/abcd21:Loan/abcd21:blocked
Unit/SpecimenUnit/abcd21:Loan/abcd21:loanConditions
Unit/SpecimenUnit/abcd21:Loan/abcd21:Disposition

  • abcd dna

dna:DNASample/dna:BlockedUntil

Permits

  • Unit/abcd21:Gathering/abcd21:Permits/abcd21:PermitInfo

abcd21:PermitInfo/abcd21:permitType
abcd21:PermitInfo/abcd21:permitStatus
abcd21:PermitInfo/abcd21:permitURI
abcd21:PermitInfo/abcd21:permitText

Preservation

  • abcd21:Unit/abcd21:SpecimenUnit/abcd21:Preservations

abcd21:preservation/abcd21:preservationType

Unit association

  • abcd 2.1
    • abcd21:UnitAssociation/abcd21:SourceInstitutionCode
    • abcd21:UnitAssociation/abcd21:SourceName
    • abcd21:UnitAssociation/abcd21:UnitID
    • abcd21:UnitAssociation/abcd21:AssociationType
    • abcd21:UnitAssociation/abcd21:Comment
    • abcd21:UnitAssociation/abcd21:DatasetAccessPoint
  • abcd 2.06
    • abcd:UnitAssociation/abcd:AssociatedUnitSourceInstitutionCode
    • abcd:UnitAssociation/abcd:AssociatedUnitSourceName
    • abcd:UnitAssociation/abcd:AssociatedUnitID
    • abcd:UnitAssociation/abcd:AssociationType
    • abcd:UnitAssociation/abcd:Comment

DarwinCore

record/darwin:CatalogNumber
record/darwin:CatalogNumberNumeric
record/darwin:CatalogNumberText
record/darwin:CollectorNumber
record/darwin:FieldNumber
record/darwin:BasisOfRecord
record/darwin:KindOfUnit
record/darwin:InstitutionCode
record/darwin:CollectionCode
record/darwin:GlobalUniqueIdentifier
record/darwin:Latitude
record/darwin:DecimalLatitude
record/darwin:Longitude
record/darwin:DecimalLongitude
record/darwin:EstablishmentMeans

record/darwin:Locality
record/darwin:Country
record/darwin:countryCode


record/darwin:YearCollected
record/darwin:MonthCollected
record/darwin:ImageURL
record/darwin:DayCollected

record/darwin:Citation
record/darwin:Collector

record/darwin:ScientificName
record/darwin:IdentifiedBy
record/darwin:TypeStatus
record/darwin:ScientificName

DarwinCore Archive

Occurrence Core

collectorNumber: http://rs.tdwg.org/dwc/terms/recordNumber
fieldNumber: http://rs.tdwg.org/dwc/terms/fieldNumber
recordbasis: http://rs.tdwg.org/dwc/terms/basisOfRecord
institution: http://rs.tdwg.org/dwc/terms/institutionCode
collection: http://rs.tdwg.org/dwc/terms/collectionCode
unitID: http://rs.tdwg.org/dwc/terms/occurrenceID
catalogNumber: http://rs.tdwg.org/dwc/terms/catalogNumber
materialSampleID: http://rs.tdwg.org/dwc/terms/materialSampleID
unitGUID:
longitude: http://rs.tdwg.org/dwc/terms/decimalLongitude
latitude: http://rs.tdwg.org/dwc/terms/decimalLatitude
locality: http://rs.tdwg.org/dwc/terms/locality
country: http://rs.tdwg.org/dwc/terms/country
countryCode: http://rs.tdwg.org/dwc/terms/countryCode
waterBody: http://rs.tdwg.org/dwc/terms/waterBody
islandGroup: http://rs.tdwg.org/dwc/terms/islandGroup
island: http://rs.tdwg.org/dwc/terms/island

coordinatePrecision: http://rs.tdwg.org/dwc/terms/coordinatePrecision
year: http://rs.tdwg.org/dwc/terms/year
month: http://rs.tdwg.org/dwc/terms/month
day: http://rs.tdwg.org/dwc/terms/day
dateIdentified: http://rs.tdwg.org/dwc/terms/dateIdentified
gatheringDate: http://rs.tdwg.org/dwc/terms/eventDate
scientificName: http://rs.tdwg.org/dwc/terms/scientificName
minimumDepth: http://rs.tdwg.org/dwc/terms/minimumDepthInMeters
minimumElevation: http://rs.tdwg.org/dwc/terms/minimumElevationInMeters
identifiedBy: http://rs.tdwg.org/dwc/terms/identifiedBy;
typeStatus: http://rs.tdwg.org/dwc/terms/typeStatus
maximumElevation: http://rs.tdwg.org/dwc/terms/maximumElevationInMeters
maximumDepth: http://rs.tdwg.org/dwc/terms/maximumDepthInMeters
associatedmedias: http://rs.tdwg.org/dwc/terms/associatedMedia
associatedUnits: http://rs.tdwg.org/dwc/terms/associatedOccurrences
associatedSequences: http://rs.tdwg.org/dwc/terms/associatedSequences
associatedTaxa: http://rs.tdwg.org/dwc/terms/associatedTaxa
fullscientificname: http://rs.tdwg.org/dwc/terms/scientificName
family: http://rs.tdwg.org/dwc/terms/family
species: http://rs.tdwg.org/dwc/terms/specificEpithet
genus: http://rs.tdwg.org/dwc/terms/genus
subspecies: http://rs.tdwg.org/dwc/terms/infraspecificEpithet
subgenus: http://rs.tdwg.org/dwc/terms/subgenus

class: http://rs.tdwg.org/dwc/terms/class
phylum: http://rs.tdwg.org/dwc/terms/phylum
kingdom: http://rs.tdwg.org/dwc/terms/kingdom
order: http://rs.tdwg.org/dwc/terms/order
author: http://rs.tdwg.org/dwc/terms/scientificNameAuthorship

establishmentMeans: http://rs.tdwg.org/dwc/terms/establishmentMeans
ownerInstitutionCode: http://rs.tdwg.org/dwc/terms/ownerInstitutionCode

ResourceRelationship

resourceRelationshipID: http://rs.tdwg.org/dwc/terms/resourceRelationshipID
relatedResourceID: http://rs.tdwg.org/dwc/terms/relatedResourceID
relationshipOfResource: http://rs.tdwg.org/dwc/terms/relationshipOfResource

SimpleImage

imageFormat: http://purl.org/dc/terms/format
imageUrl1: http://purl.org/dc/terms/identifier
imageUrl2: http://purl.org/dc/terms/accessURI
imageLicense: http://purl.org/dc/terms/license
imageType: http://purl.org/dc/terms/type
imageRights: http://purl.org/dc/terms/rights
imageRightsHolder: http://purl.org/dc/terms/rightsHolder
imageRelated: http://purl.org/dc/terms/references

recordedBy: http://rs.tdwg.org/dwc/terms/recordedBy

disposition:http://purl.org/dc/terms/disposition

GGBN extensions

GGBN Amplification

amplificationDate: http://data.ggbn.org/schemas/ggbn/terms/amplificationDate
geneticAccessionNumber: http://data.ggbn.org/schemas/ggbn/terms/geneticAccessionNumber
geneticAccessionURI: http://data.ggbn.org/schemas/ggbn/terms/geneticAccessionURI
BOLDProcessID: http://data.ggbn.org/schemas/ggbn/terms/BOLDProcessID
marker:http://data.ggbn.org/schemas/ggbn/terms/marker

GGBN Loan

blockedUntil: http://data.ggbn.org/schemas/ggbn/terms/blockedUntil
blocked:http://data.ggbn.org/schemas/ggbn/terms/blocked
loanConditions:http://data.ggbn.org/schemas/ggbn/terms/loanConditions

GGBN Preparation

preparationType: http://data.ggbn.org/schemas/ggbn/terms/preparationType
preparationDate: http://data.ggbn.org/schemas/ggbn/terms/preparationDate
preparedBy: http://data.ggbn.org/schemas/ggbn/terms/preparedBy

GGBN Preservation

preservationType: http://data.ggbn.org/schemas/ggbn/terms/preservationType

GGBN Material Sample Type

concentration: http://data.ggbn.org/schemas/ggbn/terms/concentration
concentrationunit: http://data.ggbn.org/schemas/ggbn/terms/concentrationUnit
absorbance230: http://data.ggbn.org/schemas/ggbn/terms/ratioOfAbsorbance260_230
absorbance280: http://data.ggbn.org/schemas/ggbn/terms/ratioOfAbsorbance260_280
qualityCheckDate: http://data.ggbn.org/schemas/ggbn/terms/qualityCheckDate
quality: http://data.ggbn.org/schemas/ggbn/terms/quality
materialSampleType: http://data.ggbn.org/schemas/ggbn/terms/materialSampleType

GGBN Permit

permitType: http://data.ggbn.org/schemas/ggbn/terms/permitType
permitStatus: http://data.ggbn.org/schemas/ggbn/terms/permitStatus
permitText: http://data.ggbn.org/schemas/ggbn/terms/permitStatusQualifier

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