Difference between revisions of "Indexed fields"

From Berlin Harvesting and Indexing Toolkit
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(→‎Unit association)
(→‎DarwinCore Archive)
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=DarwinCore=
 
=DarwinCore=
 
=DarwinCore Archive=
 
=DarwinCore Archive=
 +
collectorNumber: http://rs.tdwg.org/dwc/terms/recordNumber<BR>
 +
      fieldNumber: http://rs.tdwg.org/dwc/terms/fieldNumber<BR>
 +
      recordbasis: http://rs.tdwg.org/dwc/terms/basisOfRecord<BR>
 +
      institution: http://rs.tdwg.org/dwc/terms/institutionCode<BR>
 +
      collection: http://rs.tdwg.org/dwc/terms/collectionCode<BR>
 +
      unitID: http://rs.tdwg.org/dwc/terms/occurrenceID<BR>
 +
      catalogNumber: http://rs.tdwg.org/dwc/terms/catalogNumber<BR>
 +
      materialSampleID", "http://rs.tdwg.org/dwc/terms/materialSampleID<BR>
 +
      unitGUID: <BR>
 +
      longitude: http://rs.tdwg.org/dwc/terms/decimalLongitude<BR>
 +
      latitude: http://rs.tdwg.org/dwc/terms/decimalLatitude<BR>
 +
      locality: http://rs.tdwg.org/dwc/terms/locality<BR>
 +
      country: http://rs.tdwg.org/dwc/terms/country<BR>
 +
      countryCode: http://rs.tdwg.org/dwc/terms/countryCode<BR>
 +
      waterBody: http://rs.tdwg.org/dwc/terms/waterBody<BR>
 +
      islandGroup: http://rs.tdwg.org/dwc/terms/islandGroup<BR>
 +
      island: http://rs.tdwg.org/dwc/terms/island<BR>
 +
 +
 +
 +
      coordinatePrecision: http://rs.tdwg.org/dwc/terms/coordinatePrecision<BR>
 +
      year: http://rs.tdwg.org/dwc/terms/year<BR>
 +
      month: http://rs.tdwg.org/dwc/terms/month<BR>
 +
      day: http://rs.tdwg.org/dwc/terms/day<BR>
 +
      dateIdentified: http://rs.tdwg.org/dwc/terms/dateIdentified<BR>
 +
      gatheringDate: http://rs.tdwg.org/dwc/terms/eventDate<BR>
 +
      scientificName: http://rs.tdwg.org/dwc/terms/scientificName<BR>
 +
      minimumDepth: http://rs.tdwg.org/dwc/terms/minimumDepthInMeters<BR>
 +
      minimumElevation: http://rs.tdwg.org/dwc/terms/minimumElevationInMeters<BR>
 +
      identifiedBy: http://rs.tdwg.org/dwc/terms/identifiedBy;<BR>
 +
      typeStatus: http://rs.tdwg.org/dwc/terms/typeStatus<BR>
 +
      maximumElevation: http://rs.tdwg.org/dwc/terms/maximumElevationInMeters<BR>
 +
      maximumDepth: http://rs.tdwg.org/dwc/terms/maximumDepthInMeters<BR>
 +
      associatedmedias: http://rs.tdwg.org/dwc/terms/associatedMedia<BR>
 +
      associatedUnits: http://rs.tdwg.org/dwc/terms/associatedOccurrences<BR>
 +
      associatedSequences: http://rs.tdwg.org/dwc/terms/associatedSequences<BR>
 +
      associatedTaxa: http://rs.tdwg.org/dwc/terms/associatedTaxa<BR>
 +
      fullscientificname", "http://rs.tdwg.org/dwc/terms/scientificName<BR>
 +
      family", "http://rs.tdwg.org/dwc/terms/family<BR>
 +
      species: http://rs.tdwg.org/dwc/terms/specificEpithet<BR>
 +
      genus: http://rs.tdwg.org/dwc/terms/genus<BR>
 +
      subspecies: http://rs.tdwg.org/dwc/terms/infraspecificEpithet<BR>
 +
      subgenus: http://rs.tdwg.org/dwc/terms/subgenus<BR>
 +
 +
      class: http://rs.tdwg.org/dwc/terms/class<BR>
 +
      phylum: http://rs.tdwg.org/dwc/terms/phylum<BR>
 +
      kingdom: http://rs.tdwg.org/dwc/terms/kingdom<BR>
 +
      order: http://rs.tdwg.org/dwc/terms/order<BR>
 +
      author: http://rs.tdwg.org/dwc/terms/scientificNameAuthorship<BR>
 +
 +
      establishmentMeans: http://rs.tdwg.org/dwc/terms/establishmentMeans<BR>
 +
      ownerInstitutionCode", "http://rs.tdwg.org/dwc/terms/ownerInstitutionCode<BR>
 +
 +
      amplificationDate: http://data.ggbn.org/schemas/ggbn/terms/amplificationDate<BR>
 +
      geneticAccessionNumber: http://data.ggbn.org/schemas/ggbn/terms/geneticAccessionNumber<BR>
 +
      geneticAccessionURI: http://data.ggbn.org/schemas/ggbn/terms/geneticAccessionURI<BR>
 +
      BOLDProcessID: http://data.ggbn.org/schemas/ggbn/terms/BOLDProcessID<BR>
 +
      blockedUntil: http://data.ggbn.org/schemas/ggbn/terms/blockedUntil<BR>
 +
 +
      preparationType: http://data.ggbn.org/schemas/ggbn/terms/preparationType<BR>
 +
      preparationDate: http://data.ggbn.org/schemas/ggbn/terms/preparationDate<BR>
 +
      preparedBy: http://data.ggbn.org/schemas/ggbn/terms/preparedBy<BR>
 +
 +
      preservationType: http://data.ggbn.org/schemas/ggbn/terms/preservationType<BR>
 +
 +
      concentration: http://data.ggbn.org/schemas/ggbn/terms/concentration<BR>
 +
      concentrationunit: http://data.ggbn.org/schemas/ggbn/terms/concentrationUnit<BR>
 +
      absorbance230: http://data.ggbn.org/schemas/ggbn/terms/ratioOfAbsorbance260_230<BR>
 +
      absorbance280: http://data.ggbn.org/schemas/ggbn/terms/ratioOfAbsorbance260_280<BR>
 +
      qualityCheckDate: http://data.ggbn.org/schemas/ggbn/terms/qualityCheckDate<BR>
 +
      quality: http://data.ggbn.org/schemas/ggbn/terms/quality<BR>
 +
      materialSampleType: http://data.ggbn.org/schemas/ggbn/terms/materialSampleType<BR>
 +
 +
      resourceRelationshipID: http://rs.tdwg.org/dwc/terms/resourceRelationshipID<BR>
 +
      relatedResourceID: http://rs.tdwg.org/dwc/terms/relatedResourceID<BR>
 +
      relationshipOfResource: http://rs.tdwg.org/dwc/terms/relationshipOfResource<BR>
 +
 +
      permitType: http://data.ggbn.org/schemas/ggbn/terms/permitType<BR>
 +
      permitStatus: http://data.ggbn.org/schemas/ggbn/terms/permitStatus<BR>
 +
      permitText: http://data.ggbn.org/schemas/ggbn/terms/permitStatusQualifier<BR>
 +
 +
      imageFormat", "http://purl.org/dc/terms/format<BR>
 +
      imageUrl1: http://purl.org/dc/terms/identifier<BR>
 +
      imageUrl2: http://purl.org/dc/terms/accessURI<BR>
 +
      imageLicense: http://purl.org/dc/terms/license<BR>
 +
      imageType: http://purl.org/dc/terms/type<BR>
 +
      imageRights: http://purl.org/dc/terms/rights<BR>
 +
      imageRightsHolder: http://purl.org/dc/terms/rightsHolder<BR>
 +
      imageRelated: http://purl.org/dc/terms/references<BR>
 +
 +
      recordedBy: http://rs.tdwg.org/dwc/terms/recordedBy<BR>

Revision as of 16:35, 10 November 2015

ABCD

Gathering Agent

GatheringAgent/Person/FullName
GatheringAgent/AgentText
GatheringAgent@sequence

Agents/AgentText
Agents/GatheringAgentsText

Gathering coordinates

SiteCoordinates/CoordinatesLatLong/LatitudeDecimal
SiteCoordinates/CoordinatesLatLong/LongitudeDecimal
SiteCoordinates/CoordinatesLatLong/VerbatimLatitude
SiteCoordinates/CoordinatesLatLong/VerbatimLongitude
SiteCoordinates/CoordinatesLatLong/CoordinateErrorDistanceInMeters
SiteCoordinates/CoordinatesLatLong/SpatialDatum
SiteCoordinates/CoordinateMethod

Gathering details

Gathering/Country/ISO3166Code
Gathering/Country/NameDerived
Gathering/Country/Name
Gathering/LocalityText
Gathering/EstablishmentMeans
Gathering/Depth/MeasurementOrFactAtomised/Accuracy
Gathering/Depth/MeasurementOrFactAtomised/UpperValue
Gathering/Depth/MeasurementOrFactAtomised/LowerValue
Gathering/Depth/MeasurementOrFactText
Gathering/Altitude/MeasurementOrFactAtomised/UpperValue
Gathering/Altitude/MeasurementOrFactAtomised/LowerValue
Gathering/Altitude/MeasurementOrFactAtomised/Accuracy
Gathering/Altitude/MeasurementOrFactText
Gathering/DateTime/ISODateTimeBegin
Gathering/DateTime/ISODateTimeEnd
Gathering/DateTime/DateText
NamedArea/AreaName


Stratigraphy

  • ChronostratigraphicTerms, BiostratigraphicTerms, LithostratigraphicTerms

Gathering/Stratigraphy/StratigraphyText
ChronostratigraphicTerm/Comment
ChronostratigraphicTerm/Domain
ChronostratigraphicTerm/SourceName
ChronostratigraphicTerm/SourceNameVersion
ChronostratigraphicTerm/Term

BiostratigraphicTerm/Comment
BiostratigraphicTerm/Domain
BiostratigraphicTerm/SourceName
BiostratigraphicTerm/SourceNameVersion
BiostratigraphicTerm/Term

LithostratigraphicTerm/Comment
LithostratigraphicTerm/Domain
LithostratigraphicTerm/SourceName
LithostratigraphicTerm/SourceNameVersion
LithostratigraphicTerm/Term

  • (UnitExtension/UnitHostRock/HostRockText, UnitExtension/UnitHostRock/HostRockStratigraphy/ChronostratigraphicAttributions/ChronostratigraphicAttribution, UnitExtension/UnitHostRock/HostRockStratigraphy/LithostratigraphicAttributions/LithostratigraphicAttribution, UnitExtension/UnitHostRock/HostRockStratigraphy/BiostratigraphicAttribution)

ChronostratigraphicAttribution/ChronoStratigraphicDivision
ChronostratigraphicAttribution/ChronostratigraphicName

LithostratigraphicAttribution/LithostratigraphicDivision
LithostratigraphicAttribution/LithostratigraphicName

BiostratigraphicAttribution/BiostratigraphicDivision
BiostratigraphicAttribution/BiostratigraphicName


Higher taxon

HigherTaxon/HigherTaxonName
HigherTaxon/HigherTaxonRank

Identification

Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString
Identification/Result/TaxonIdentified/InformalNameString
Identification/Result/Extension/MineralRockIdentified/ClassifiedName/FullScientificNameString
Identification/PreferredFlag
Identification/Date/ISODateTimeBegin
Identification/Date/ISODateTimeEnd
Identification/Date/DateText
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/GenusOrMonomial
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/SubGenus
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/InfraspecificEpithet
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/SubspeciesEpithet
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/FirstEpithet
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/SpeciesEpithet
Identifier/PersonName/FullName
Identifiers/IdentifiersText

Measurements or facts

  • abcd 2.1
    • abcd21:Unit/abcd21:MeasurementsOrFacts/abcd21:MeasurementOrFact
    • abcd21:SpecimenUnit/abcd21:SpecimenMeasurementsOrFacts/abcd21:SpecimenMeasurementOrFact
    • abcd21:SiteMeasurementsOrFacts/abcd21:SiteMeasurementOrFact
  • abcd 2.06
    • abcd:Unit/abcd:MeasurementsOrFacts/abcd:MeasurementOrFact
    • abcd:SiteMeasurementsOrFacts/abcd:SiteMeasurementOrFact


measurementOrFactStr=MeasurementOrFact or SiteMeasurementOrFact or SpecimenMeasurementOrFact

measurementOrFactStr/MeasurementOrFactAtomised/MeasuredBy
measurementOrFactStr/MeasurementOrFactAtomised/MeasurementDateTime
measurementOrFactStr/MeasurementOrFactAtomised/Duration
measurementOrFactStr/MeasurementOrFactAtomised/Method
measurementOrFactStr/MeasurementOrFactAtomised/Parameter
measurementOrFactStr/MeasurementOrFactAtomised/AppliesTo
measurementOrFactStr/MeasurementOrFactAtomised/LowerValue
measurementOrFactStr/MeasurementOrFactAtomised/UpperValue
measurementOrFactStr/MeasurementOrFactAtomised/UnitOfMeasurement
measurementOrFactStr/MeasurementOrFactAtomised/Accuracy
measurementOrFactStr/MeasurementOrFactAtomised/MeasurementOrFactReference
measurementOrFactStr/MeasurementOrFactAtomised/IsQuantitative
measurementOrFactStr/MeasurementOrFactText

Multimedia

  • abcd 2.1:MultiMediaObject
  • abcd 2.06: MultiMediaObject


MultiMediaObject/Format
MultiMediaObject/fileFormat
MultiMediaObject/ProductURI
MultiMediaObject/FileURI
Copyright/Text
TermsOfUse/Text
License/Text

Unit

Unit/RecordURI
Unit/CollectorsFieldNumber
Unit/RecordBasis
Unit/KindOfUnit
Unit/SourceInstitutionID
Unit/SourceID
Unit/UnitGUID
NomenclaturalTypeDesignation/NomenclaturalReference/TitleCitation
NomenclaturalTypeDesignation/TypeStatus
NomenclaturalTypeDesignation/VerificationNotes
NomenclaturalTypeDesignation/TypifiedName/FullScientificNameString

Sequences

Unit/Sequences/Sequence
Sequence/Database
Sequence/ID-in-Database

GGBN terms

  • abcd ggbn
    • UnitExtension/ggbn:GGBN/ggbn:ratioOfAbsorbance260_230
    • UnitExtension/ggbn:GGBN/ggbn:ratioOfAbsorbance260_280
    • UnitExtension/ggbn:GGBN/ggbn:concentration
    • UnitExtension/ggbn:GGBN/ggbn:qualityCheckDate
  • abcd dba
    • dna:DNASample/dna:Tissue
    • dna:DNASample/dna:Preservation
    • dna:DNASample/dna:ExtractionStaff
    • dna:DNASample/dna:ExtractionDate
    • dna:DNASample/dna:ExtractionMethod
    • dna:DNASample/dna:RatioOfAbsorbance260_230
    • dna:DNASample/dna:RatioOfAbsorbance260_280
    • dna:DNASample/dna:Concentration + unit
    • dna:DNASample/dna:Type
    • dna:DNASample/dna:QualityCheckDate


Amplification and accession number

  • UnitExtension/ggbn:GGBN/ggbn:Amplifications/ggbn:amplification
  • abcd ggbn
    • ggbn:amplification/ggbn:marker
    • ggbn:sequencing
    • ggbn:geneticAccession/ggbn:geneticAccessionNumber
    • ggbn:geneticAccession/ggbn:geneticAccessionNumberURI
    • ggbn:geneticAccession/ggbn:BOLDProcessID
  • abcd dna
    • dna:Amplification/dna:GeneticLocus
    • dna:Sequencing/dna:GenBankNumber
    • dna:Sequencing/dna:GenBankNumber-URI
  • abcd 2.06
    • Unit/SpecimenUnit/Accessions/AccessionNumber
  • abcd2.1
    • Unit/SpecimenUnit/Accessions/AccessionNumber
    • Unit/SpecimenUnit/Preparations/preparation/sampleDesignations/sampleDesignation

Preparation

  • Unit/abcd21:SpecimenUnit/abcd21:Preparations/abcd21:preparation

abcd21:preparation/abcd21:preparationType
abcd21:preparation/abcd21:preparationMaterials
abcd21:preparation/abcd21:preparationAgent/abcd21:Person/abcd21:FullName
abcd21:preparation/abcd21:preparationDate

Loan

Unit/SpecimenUnit/abcd21:Loan/abcd21:blockedUntil
Unit/SpecimenUnit/abcd21:Loan/abcd21:blocked
Unit/SpecimenUnit/abcd21:Loan/abcd21:loanConditions
Unit/SpecimenUnit/abcd21:Loan/abcd21:Disposition

  • abcd dna

dna:DNASample/dna:BlockedUntil

Permits

  • Unit/abcd21:Gathering/abcd21:Permits/abcd21:PermitInfo

abcd21:PermitInfo/abcd21:permitType
abcd21:PermitInfo/abcd21:permitStatus
abcd21:PermitInfo/abcd21:permitURI
abcd21:PermitInfo/abcd21:permitText

Preservation

  • abcd21:Unit/abcd21:SpecimenUnit/abcd21:Preservations

abcd21:preservation/abcd21:preservationType

Unit association

  • abcd 2.1
    • abcd21:UnitAssociation/abcd21:SourceInstitutionCode
    • abcd21:UnitAssociation/abcd21:SourceName
    • abcd21:UnitAssociation/abcd21:UnitID
    • abcd21:UnitAssociation/abcd21:AssociationType
    • abcd21:UnitAssociation/abcd21:Comment
    • abcd21:UnitAssociation/abcd21:DatasetAccessPoint
  • abcd 2.06
    • abcd:UnitAssociation/abcd:AssociatedUnitSourceInstitutionCode
    • abcd:UnitAssociation/abcd:AssociatedUnitSourceName
    • abcd:UnitAssociation/abcd:AssociatedUnitID
    • abcd:UnitAssociation/abcd:AssociationType
    • abcd:UnitAssociation/abcd:Comment

DarwinCore

DarwinCore Archive

collectorNumber: http://rs.tdwg.org/dwc/terms/recordNumber

      fieldNumber: http://rs.tdwg.org/dwc/terms/fieldNumber

      recordbasis: http://rs.tdwg.org/dwc/terms/basisOfRecord

      institution: http://rs.tdwg.org/dwc/terms/institutionCode

      collection: http://rs.tdwg.org/dwc/terms/collectionCode

      unitID: http://rs.tdwg.org/dwc/terms/occurrenceID

      catalogNumber: http://rs.tdwg.org/dwc/terms/catalogNumber

      materialSampleID", "http://rs.tdwg.org/dwc/terms/materialSampleID

      unitGUID: 

      longitude: http://rs.tdwg.org/dwc/terms/decimalLongitude

      latitude: http://rs.tdwg.org/dwc/terms/decimalLatitude

      locality: http://rs.tdwg.org/dwc/terms/locality

      country: http://rs.tdwg.org/dwc/terms/country

      countryCode: http://rs.tdwg.org/dwc/terms/countryCode

      waterBody: http://rs.tdwg.org/dwc/terms/waterBody

      islandGroup: http://rs.tdwg.org/dwc/terms/islandGroup

      island: http://rs.tdwg.org/dwc/terms/island




      coordinatePrecision: http://rs.tdwg.org/dwc/terms/coordinatePrecision

      year: http://rs.tdwg.org/dwc/terms/year

      month: http://rs.tdwg.org/dwc/terms/month

      day: http://rs.tdwg.org/dwc/terms/day

      dateIdentified: http://rs.tdwg.org/dwc/terms/dateIdentified

      gatheringDate: http://rs.tdwg.org/dwc/terms/eventDate

      scientificName: http://rs.tdwg.org/dwc/terms/scientificName

      minimumDepth: http://rs.tdwg.org/dwc/terms/minimumDepthInMeters

      minimumElevation: http://rs.tdwg.org/dwc/terms/minimumElevationInMeters

      identifiedBy: http://rs.tdwg.org/dwc/terms/identifiedBy;

      typeStatus: http://rs.tdwg.org/dwc/terms/typeStatus

      maximumElevation: http://rs.tdwg.org/dwc/terms/maximumElevationInMeters

      maximumDepth: http://rs.tdwg.org/dwc/terms/maximumDepthInMeters

      associatedmedias: http://rs.tdwg.org/dwc/terms/associatedMedia

      associatedUnits: http://rs.tdwg.org/dwc/terms/associatedOccurrences

      associatedSequences: http://rs.tdwg.org/dwc/terms/associatedSequences

      associatedTaxa: http://rs.tdwg.org/dwc/terms/associatedTaxa

      fullscientificname", "http://rs.tdwg.org/dwc/terms/scientificName

      family", "http://rs.tdwg.org/dwc/terms/family

      species: http://rs.tdwg.org/dwc/terms/specificEpithet

      genus: http://rs.tdwg.org/dwc/terms/genus

      subspecies: http://rs.tdwg.org/dwc/terms/infraspecificEpithet

      subgenus: http://rs.tdwg.org/dwc/terms/subgenus


      class: http://rs.tdwg.org/dwc/terms/class

      phylum: http://rs.tdwg.org/dwc/terms/phylum

      kingdom: http://rs.tdwg.org/dwc/terms/kingdom

      order: http://rs.tdwg.org/dwc/terms/order

      author: http://rs.tdwg.org/dwc/terms/scientificNameAuthorship


      establishmentMeans: http://rs.tdwg.org/dwc/terms/establishmentMeans

      ownerInstitutionCode", "http://rs.tdwg.org/dwc/terms/ownerInstitutionCode


      amplificationDate: http://data.ggbn.org/schemas/ggbn/terms/amplificationDate

      geneticAccessionNumber: http://data.ggbn.org/schemas/ggbn/terms/geneticAccessionNumber

      geneticAccessionURI: http://data.ggbn.org/schemas/ggbn/terms/geneticAccessionURI

      BOLDProcessID: http://data.ggbn.org/schemas/ggbn/terms/BOLDProcessID

      blockedUntil: http://data.ggbn.org/schemas/ggbn/terms/blockedUntil


      preparationType: http://data.ggbn.org/schemas/ggbn/terms/preparationType

      preparationDate: http://data.ggbn.org/schemas/ggbn/terms/preparationDate

      preparedBy: http://data.ggbn.org/schemas/ggbn/terms/preparedBy


      preservationType: http://data.ggbn.org/schemas/ggbn/terms/preservationType


      concentration: http://data.ggbn.org/schemas/ggbn/terms/concentration

      concentrationunit: http://data.ggbn.org/schemas/ggbn/terms/concentrationUnit

      absorbance230: http://data.ggbn.org/schemas/ggbn/terms/ratioOfAbsorbance260_230

      absorbance280: http://data.ggbn.org/schemas/ggbn/terms/ratioOfAbsorbance260_280

      qualityCheckDate: http://data.ggbn.org/schemas/ggbn/terms/qualityCheckDate

      quality: http://data.ggbn.org/schemas/ggbn/terms/quality

      materialSampleType: http://data.ggbn.org/schemas/ggbn/terms/materialSampleType


      resourceRelationshipID: http://rs.tdwg.org/dwc/terms/resourceRelationshipID

      relatedResourceID: http://rs.tdwg.org/dwc/terms/relatedResourceID

      relationshipOfResource: http://rs.tdwg.org/dwc/terms/relationshipOfResource


      permitType: http://data.ggbn.org/schemas/ggbn/terms/permitType

      permitStatus: http://data.ggbn.org/schemas/ggbn/terms/permitStatus

      permitText: http://data.ggbn.org/schemas/ggbn/terms/permitStatusQualifier


      imageFormat", "http://purl.org/dc/terms/format

      imageUrl1: http://purl.org/dc/terms/identifier

      imageUrl2: http://purl.org/dc/terms/accessURI

      imageLicense: http://purl.org/dc/terms/license

      imageType: http://purl.org/dc/terms/type

      imageRights: http://purl.org/dc/terms/rights

      imageRightsHolder: http://purl.org/dc/terms/rightsHolder

      imageRelated: http://purl.org/dc/terms/references


      recordedBy: http://rs.tdwg.org/dwc/terms/recordedBy
Retrieved from "https://wiki.bgbm.org/bhit/index.php?title=Indexed_fields&oldid=116"