WalterBerendsohn at 09:04, 6 August 2024

2024-08-06T09:04:45Z

← Older revision		Revision as of 11:04, 6 August 2024
Line 15:		Line 15:
	Schoch CL, Ciufo S, Domrachev M, Hotton CL, Kannan S, Khovanskaya R, Leipe D, Mcveigh R, O'Neill K, Robbertse B, Sharma S, Soussov V, Sullivan JP, Sun L, Turner S, Karsch-Mizrachi I. (2020). NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020 Jan 1;2020:baaa062. doi: [https://doi.org/10.1093/database/baaa062 10.1093/database/baaa062].		Schoch CL, Ciufo S, Domrachev M, Hotton CL, Kannan S, Khovanskaya R, Leipe D, Mcveigh R, O'Neill K, Robbertse B, Sharma S, Soussov V, Sullivan JP, Sun L, Turner S, Karsch-Mizrachi I. (2020). NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020 Jan 1;2020:baaa062. doi: [https://doi.org/10.1093/database/baaa062 10.1093/database/baaa062].

	'''(Plants:)''' Borsch, T., Berendsohn, W., Dalcin, E., Delmas, M., Demissew, S., Elliott, A., Fritsch, P., Fuchs, A., Geltman, D., Güner, A., Haevermans, T., Knapp, S., le Roux, M. M., Loizeau, P.-A., Miller, C., Miller, J., Miller, J. T., Palese, R., Paton, A., & Zamora, N. (2020). World Flora Online: placing taxonomists at the heart of a definitive and comprehensive global resource on the world’s plants. Taxon, 69, 1311–1341. doi: [https://doi.org/10.1002/tax.12373 https://doi.org/10.1002/tax.12373]		'''(Plants:)'''

	Govaerts, R., Nic Lughadha, E., Black, N., Turner, R. & Paton, A. 2021: The World Checklist of Vascular Plants, a continuously updated resource for exploring global plant diversity. Sci Data 8, 215 ~~(2021)~~. doi: [https://doi.org/10.1038/s41597-021-00997-6 https://doi.org/10.1038/s41597-021-00997-6]		Borsch, T., Berendsohn, W., Dalcin, E., Delmas, M., Demissew, S., Elliott, A., Fritsch, P., Fuchs, A., Geltman, D., Güner, A., Haevermans, T., Knapp, S., le Roux, M. M., Loizeau, P.-A., Miller, C., Miller, J., Miller, J. T., Palese, R., Paton, A., & Zamora, N. (2020). World Flora Online: placing taxonomists at the heart of a definitive and comprehensive global resource on the world’s plants. Taxon, 69, 1311–1341. doi: [https://doi.org/10.1002/tax.12373 https://doi.org/10.1002/tax.12373]

			Govaerts, R., Nic Lughadha, E., Black, N., Turner, R. & Paton, A. (2021): The World Checklist of Vascular Plants, a continuously updated resource for exploring global plant diversity. Sci Data 8, 215. doi: [https://doi.org/10.1038/s41597-021-00997-6 https://doi.org/10.1038/s41597-021-00997-6]

	==On name and taxon identifiers==		==On name and taxon identifiers==
	Anonymous 2023: Wikidata - List of taxon identifiers. [https://en.wikipedia.org/wiki/Template:Taxonbar/doc#Taxon_identifiers https://en.wikipedia.org/wiki/Template:Taxonbar/doc#Taxon_identifiers]		Anonymous (2023): Wikidata - List of taxon identifiers. [https://en.wikipedia.org/wiki/Template:Taxonbar/doc#Taxon_identifiers https://en.wikipedia.org/wiki/Template:Taxonbar/doc#Taxon_identifiers]

	Page R. D. M. 2023: Ten years and a million links: building a global taxonomic library connecting persistent identifiers for names, publications and people		Page R. D. M. (2023): Ten years and a million links: building a global taxonomic library connecting persistent identifiers for names, publications and people
	doi: [https://doi.org/10.1101/2023.05.29.542697 https://doi.org/10.1101/2023.05.29.542697]		doi: [https://doi.org/10.1101/2023.05.29.542697 https://doi.org/10.1101/2023.05.29.542697]

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	Pyle, R. L., Barik, S. K., Christidis, L., Conix, S., Costello, M. J., van Dijk, P. P., Garnett, S. T., Hobern, D., Kirk, P. M., Lien, A. M., Orrell, T. M., Remsen, D., Thomson, S. A., Wambiji, N., Zachos, F. E., Zhang, Z-Q., Thiele, K. R. (2021). Towards a global list of accepted species V. The devil is in the details. Organisms Diversity & Evolution. doi: [https://doi.org/10.1007/s13127-021-00504-0 https://doi.org/10.1007/s13127-021-00504-0]		Pyle, R. L., Barik, S. K., Christidis, L., Conix, S., Costello, M. J., van Dijk, P. P., Garnett, S. T., Hobern, D., Kirk, P. M., Lien, A. M., Orrell, T. M., Remsen, D., Thomson, S. A., Wambiji, N., Zachos, F. E., Zhang, Z-Q., Thiele, K. R. (2021). Towards a global list of accepted species V. The devil is in the details. Organisms Diversity & Evolution. doi: [https://doi.org/10.1007/s13127-021-00504-0 https://doi.org/10.1007/s13127-021-00504-0]

			==Use cases==
			Islam, S., Papale, D., Vaira, L., Rosati, I. Peterseil, J. & Pichot, C. (2024): Navigating taxonomic complexity: A use-case report on FAIR scientific name-matching service usage in ENVRI Research Infrastructures. Research Ideas and Outcomes 10. doi: [https://doi.org/10.3897/rio.10.e121871 https://doi.org/10.3897/rio.10.e121871]

	==Standards==		==Standards==
Line 36:		Line 41:

	GBIF course links: [https://docs.gbif.org/course-data-use/en/openrefine.html https://docs.gbif.org/course-data-use/en/openrefine.html]		GBIF course links: [https://docs.gbif.org/course-data-use/en/openrefine.html https://docs.gbif.org/course-data-use/en/openrefine.html]

			Whitmire, A. & Mozzherin, D. (2023): Reconciling taxonomic names in OpenRefine via Global Names. URL: [https://github.com/gnames/gnverifier/wiki/OpenRefine-readme https://github.com/gnames/gnverifier/wiki/OpenRefine-readme]

WalterBerendsohn at 18:51, 19 April 2024

2024-04-19T18:51:11Z

← Older revision		Revision as of 20:51, 19 April 2024
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	==On taxonomic aggregators (global species lists) and the aggregation process==		==On taxonomic aggregators (global species lists) and the aggregation process==

			Döring, M., Jeppesen, T., & Bánki, O. (2022). Introducing ChecklistBank: An index and repository for taxonomic data. Biodiversity Information Science and Standards, 6, e93938. doi: [https://doi.org/10.3897/biss.6.93938 https://doi.org/10.3897/biss.6.93938]

	Garnett, S. T., Christidis, L., Conix, S., Costello, M. J., Zachos, F. E., Bánki, O. S., Bao, Y., Barik, S. K., Buckeridge, J. S., Hobern, D. & Lien, A. (2020). Principles for creating a single authoritative list of the world’s species. PLoS Biology, 18(7), e3000736. doi: [https://doi.org/10.1371/journal.pbio.3000736 https://doi.org/10.1371/journal.pbio.3000736]		Garnett, S. T., Christidis, L., Conix, S., Costello, M. J., Zachos, F. E., Bánki, O. S., Bao, Y., Barik, S. K., Buckeridge, J. S., Hobern, D. & Lien, A. (2020). Principles for creating a single authoritative list of the world’s species. PLoS Biology, 18(7), e3000736. doi: [https://doi.org/10.1371/journal.pbio.3000736 https://doi.org/10.1371/journal.pbio.3000736]

Line 8:		Line 11:
	Hobern, D., Barik, S. K., Christidis, L., Garnett, S. T. Kirk, P., Orrell, T. M., Pape, T., Pyle, R. L., Thiele, K. R., Zachos, F. E., & Bánki, O. (2021). Towards a global list of accepted species VI. The Catalogue of Life checklist. Org Divers Evol. doi: [https://doi.org/10.1007/s13127-021-00516-w https://doi.org/10.1007/s13127-021-00516-w]		Hobern, D., Barik, S. K., Christidis, L., Garnett, S. T. Kirk, P., Orrell, T. M., Pape, T., Pyle, R. L., Thiele, K. R., Zachos, F. E., & Bánki, O. (2021). Towards a global list of accepted species VI. The Catalogue of Life checklist. Org Divers Evol. doi: [https://doi.org/10.1007/s13127-021-00516-w https://doi.org/10.1007/s13127-021-00516-w]

	~~Döring~~, M., ~~Jeppesen~~, T., & ~~Bánki, O~~. (~~2022~~). ~~Introducing ChecklistBank: An index and repository~~ for ~~taxonomic data~~. ~~Biodiversity Information Science and Standards~~, ~~6, e93938.~~ doi: [https://doi.org/10.~~3897~~/~~biss~~.~~6.93938~~ https://doi.org/10.~~3897~~/~~biss.6~~.~~93938~~]		Lien, A., Banki, O., Barik, S. K., Buckeridge, J. S., Christidis, L., Cigliano, M. M., Conix, S., Costello, M. J., Hobern, D., Kirk, P. M., Kroh, A., Montgomery, N., Nikolaeva, S., Orrell, T. M., Pyle, R. L., Raz, L., Thiele, K., Thomson, S. A., van Dijk, P. P., Wambiji, N., Whalen, A., Zachos, F. E., Zhi-Qiang Zhang & Stephen T. Garnett (2023). Widespread support for a global species list with a formal governance system. PNAS 120(45), doi: [https://doi.org/10.1073/pnas.2306899120 https://doi.org/10.1073/pnas.2306899120]

	Schoch CL, Ciufo S, Domrachev M, Hotton CL, Kannan S, Khovanskaya R, Leipe D, Mcveigh R, O'Neill K, Robbertse B, Sharma S, Soussov V, Sullivan JP, Sun L, Turner S, Karsch-Mizrachi I. (2020). NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020 Jan 1;2020:baaa062. doi: [https://doi.org/10.1093/database/baaa062 10.1093/database/baaa062].		Schoch CL, Ciufo S, Domrachev M, Hotton CL, Kannan S, Khovanskaya R, Leipe D, Mcveigh R, O'Neill K, Robbertse B, Sharma S, Soussov V, Sullivan JP, Sun L, Turner S, Karsch-Mizrachi I. (2020). NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020 Jan 1;2020:baaa062. doi: [https://doi.org/10.1093/database/baaa062 10.1093/database/baaa062].

WalterBerendsohn at 20:53, 27 February 2024

2024-02-27T20:53:24Z

← Older revision		Revision as of 22:53, 27 February 2024
Line 29:		Line 29:
	==Standards==		==Standards==
	Döring, M., & Ower, G. D. (2019). The Catalogue of Life Data Package - A new format for exchanging nomenclatural and taxonomic information. Biodiversity Information Science and Standards, 3, e38711. [https://doi.org/10.3897/biss.3.38771 https://doi.org/10.3897/biss.3.38771]		Döring, M., & Ower, G. D. (2019). The Catalogue of Life Data Package - A new format for exchanging nomenclatural and taxonomic information. Biodiversity Information Science and Standards, 3, e38711. [https://doi.org/10.3897/biss.3.38771 https://doi.org/10.3897/biss.3.38771]

			==OpenRefine==

			GBIF course links: [https://docs.gbif.org/course-data-use/en/openrefine.html https://docs.gbif.org/course-data-use/en/openrefine.html]

WalterBerendsohn at 11:36, 28 August 2023

2023-08-28T11:36:47Z

← Older revision		Revision as of 13:36, 28 August 2023
Line 3:		Line 3:
	==On taxonomic aggregators (global species lists) and the aggregation process==		==On taxonomic aggregators (global species lists) and the aggregation process==
	Garnett, S. T., Christidis, L., Conix, S., Costello, M. J., Zachos, F. E., Bánki, O. S., Bao, Y., Barik, S. K., Buckeridge, J. S., Hobern, D. & Lien, A. (2020). Principles for creating a single authoritative list of the world’s species. PLoS Biology, 18(7), e3000736. doi: [https://doi.org/10.1371/journal.pbio.3000736 https://doi.org/10.1371/journal.pbio.3000736]		Garnett, S. T., Christidis, L., Conix, S., Costello, M. J., Zachos, F. E., Bánki, O. S., Bao, Y., Barik, S. K., Buckeridge, J. S., Hobern, D. & Lien, A. (2020). Principles for creating a single authoritative list of the world’s species. PLoS Biology, 18(7), e3000736. doi: [https://doi.org/10.1371/journal.pbio.3000736 https://doi.org/10.1371/journal.pbio.3000736]

			Grenié M., Berti E., Carvajal-Quintero J., Dädlow G.M.L., Sagouis A. & Winter, M. 2022. Harmonizing taxon names in biodiversity data: A review of tools, databases and best practices. Methods in Ecology and Evolution 14(1): 12-25. [https://doi.org/10.1111/2041-210X.13802 https://doi.org/10.1111/2041-210X.13802]

	Hobern, D., Barik, S. K., Christidis, L., Garnett, S. T. Kirk, P., Orrell, T. M., Pape, T., Pyle, R. L., Thiele, K. R., Zachos, F. E., & Bánki, O. (2021). Towards a global list of accepted species VI. The Catalogue of Life checklist. Org Divers Evol. doi: [https://doi.org/10.1007/s13127-021-00516-w https://doi.org/10.1007/s13127-021-00516-w]		Hobern, D., Barik, S. K., Christidis, L., Garnett, S. T. Kirk, P., Orrell, T. M., Pape, T., Pyle, R. L., Thiele, K. R., Zachos, F. E., & Bánki, O. (2021). Towards a global list of accepted species VI. The Catalogue of Life checklist. Org Divers Evol. doi: [https://doi.org/10.1007/s13127-021-00516-w https://doi.org/10.1007/s13127-021-00516-w]
Line 8:		Line 10:
	Döring, M., Jeppesen, T., & Bánki, O. (2022). Introducing ChecklistBank: An index and repository for taxonomic data. Biodiversity Information Science and Standards, 6, e93938. doi: [https://doi.org/10.3897/biss.6.93938 https://doi.org/10.3897/biss.6.93938]		Döring, M., Jeppesen, T., & Bánki, O. (2022). Introducing ChecklistBank: An index and repository for taxonomic data. Biodiversity Information Science and Standards, 6, e93938. doi: [https://doi.org/10.3897/biss.6.93938 https://doi.org/10.3897/biss.6.93938]

	Schoch CL, Ciufo S, Domrachev M, Hotton CL, Kannan S, Khovanskaya R, Leipe D, Mcveigh R, O'Neill K, Robbertse B, Sharma S, Soussov V, Sullivan JP, Sun L, Turner S, Karsch-Mizrachi I. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020 Jan 1;2020:baaa062. doi: [https://doi.org/10.1093/database/baaa062 10.1093/database/baaa062].		Schoch CL, Ciufo S, Domrachev M, Hotton CL, Kannan S, Khovanskaya R, Leipe D, Mcveigh R, O'Neill K, Robbertse B, Sharma S, Soussov V, Sullivan JP, Sun L, Turner S, Karsch-Mizrachi I. (2020). NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020 Jan 1;2020:baaa062. doi: [https://doi.org/10.1093/database/baaa062 10.1093/database/baaa062].

	'''(Plants:)''' Borsch, T., Berendsohn, W., Dalcin, E., Delmas, M., Demissew, S., Elliott, A., Fritsch, P., Fuchs, A., Geltman, D., Güner, A., Haevermans, T., Knapp, S., le Roux, M. M., Loizeau, P.-A., Miller, C., Miller, J., Miller, J. T., Palese, R., Paton, A., & Zamora, N. (2020). World Flora Online: placing taxonomists at the heart of a definitive and comprehensive global resource on the world’s plants. Taxon, 69, 1311–1341. doi: [https://doi.org/10.1002/tax.12373 https://doi.org/10.1002/tax.12373]		'''(Plants:)''' Borsch, T., Berendsohn, W., Dalcin, E., Delmas, M., Demissew, S., Elliott, A., Fritsch, P., Fuchs, A., Geltman, D., Güner, A., Haevermans, T., Knapp, S., le Roux, M. M., Loizeau, P.-A., Miller, C., Miller, J., Miller, J. T., Palese, R., Paton, A., & Zamora, N. (2020). World Flora Online: placing taxonomists at the heart of a definitive and comprehensive global resource on the world’s plants. Taxon, 69, 1311–1341. doi: [https://doi.org/10.1002/tax.12373 https://doi.org/10.1002/tax.12373]

WalterBerendsohn at 12:46, 14 August 2023

2023-08-14T12:46:18Z

← Older revision		Revision as of 14:46, 14 August 2023
Line 23:		Line 23:
	Thiele, K., Conix, S., Pyle, R. L., Barik, S. K., Christidis, L., Costello, M. J., van Dijk, P. P., Kirk, P., Lien, A., Thomson, S. A., Zachos, F. E., Zhang, Z.-Q., Garnett, S. T. (2021). Towards a global list of accepted species I. Why taxonomists sometimes disagree, and why this matters. Organisms Diversity & Evolution. doi: [https://doi.org/10.1007/s13127-021-00495-y https://doi.org/10.1007/s13127-021-00495-y]		Thiele, K., Conix, S., Pyle, R. L., Barik, S. K., Christidis, L., Costello, M. J., van Dijk, P. P., Kirk, P., Lien, A., Thomson, S. A., Zachos, F. E., Zhang, Z.-Q., Garnett, S. T. (2021). Towards a global list of accepted species I. Why taxonomists sometimes disagree, and why this matters. Organisms Diversity & Evolution. doi: [https://doi.org/10.1007/s13127-021-00495-y https://doi.org/10.1007/s13127-021-00495-y]

	Pyle, R. L., Barik, S. K., Christidis, L., Conix, S., Costello, M. J., van Dijk, P. P., Garnett, S. T., Hobern, D., Kirk, P. M., Lien, A. M., Orrell, T. M., Remsen, D., Thomson, S. A., Wambiji, N., Zachos, F. E., Zhang, Z-Q., Thiele, K. R. (2021). Towards a global list of accepted species V. The devil is in the details. Organisms Diversity & Evolution.		Pyle, R. L., Barik, S. K., Christidis, L., Conix, S., Costello, M. J., van Dijk, P. P., Garnett, S. T., Hobern, D., Kirk, P. M., Lien, A. M., Orrell, T. M., Remsen, D., Thomson, S. A., Wambiji, N., Zachos, F. E., Zhang, Z-Q., Thiele, K. R. (2021). Towards a global list of accepted species V. The devil is in the details. Organisms Diversity & Evolution. doi: [https://doi.org/10.1007/s13127-021-00504-0 https://doi.org/10.1007/s13127-021-00504-0]

	==Standards==		==Standards==
	Döring, M., & Ower, G. D. (2019). The Catalogue of Life Data Package - A new format for exchanging nomenclatural and taxonomic information. Biodiversity Information Science and Standards, 3, e38711. [https://doi.org/10.3897/biss.3.38771 https://doi.org/10.3897/biss.3.38771]		Döring, M., & Ower, G. D. (2019). The Catalogue of Life Data Package - A new format for exchanging nomenclatural and taxonomic information. Biodiversity Information Science and Standards, 3, e38711. [https://doi.org/10.3897/biss.3.38771 https://doi.org/10.3897/biss.3.38771]

WalterBerendsohn at 09:11, 27 July 2023

2023-07-27T09:11:35Z

← Older revision		Revision as of 11:11, 27 July 2023
Line 10:		Line 10:
	Schoch CL, Ciufo S, Domrachev M, Hotton CL, Kannan S, Khovanskaya R, Leipe D, Mcveigh R, O'Neill K, Robbertse B, Sharma S, Soussov V, Sullivan JP, Sun L, Turner S, Karsch-Mizrachi I. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020 Jan 1;2020:baaa062. doi: [https://doi.org/10.1093/database/baaa062 10.1093/database/baaa062].		Schoch CL, Ciufo S, Domrachev M, Hotton CL, Kannan S, Khovanskaya R, Leipe D, Mcveigh R, O'Neill K, Robbertse B, Sharma S, Soussov V, Sullivan JP, Sun L, Turner S, Karsch-Mizrachi I. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020 Jan 1;2020:baaa062. doi: [https://doi.org/10.1093/database/baaa062 10.1093/database/baaa062].

	~~===~~Plants:~~===~~		'''(Plants:)''' Borsch, T., Berendsohn, W., Dalcin, E., Delmas, M., Demissew, S., Elliott, A., Fritsch, P., Fuchs, A., Geltman, D., Güner, A., Haevermans, T., Knapp, S., le Roux, M. M., Loizeau, P.-A., Miller, C., Miller, J., Miller, J. T., Palese, R., Paton, A., & Zamora, N. (2020). World Flora Online: placing taxonomists at the heart of a definitive and comprehensive global resource on the world’s plants. Taxon, 69, 1311–1341. doi: [https://doi.org/10.1002/tax.12373 https://doi.org/10.1002/tax.12373]
	Borsch, T., Berendsohn, W., Dalcin, E., Delmas, M., Demissew, S., Elliott, A., Fritsch, P., Fuchs, A., Geltman, D., Güner, A., Haevermans, T., Knapp, S., le Roux, M. M., Loizeau, P.-A., Miller, C., Miller, J., Miller, J. T., Palese, R., Paton, A., & Zamora, N. (2020). World Flora Online: placing taxonomists at the heart of a definitive and comprehensive global resource on the world’s plants. Taxon, 69, 1311–1341. doi: [https://doi.org/10.1002/tax.12373 https://doi.org/10.1002/tax.12373]

	Govaerts, R., Nic Lughadha, E., Black, N., Turner, R. & Paton, A. 2021: The World Checklist of Vascular Plants, a continuously updated resource for exploring global plant diversity. Sci Data 8, 215 (2021). doi: [https://doi.org/10.1038/s41597-021-00997-6 https://doi.org/10.1038/s41597-021-00997-6]		Govaerts, R., Nic Lughadha, E., Black, N., Turner, R. & Paton, A. 2021: The World Checklist of Vascular Plants, a continuously updated resource for exploring global plant diversity. Sci Data 8, 215 (2021). doi: [https://doi.org/10.1038/s41597-021-00997-6 https://doi.org/10.1038/s41597-021-00997-6]

WalterBerendsohn at 14:22, 26 July 2023

2023-07-26T14:22:59Z

← Older revision		Revision as of 16:22, 26 July 2023
Line 10:		Line 10:
	Schoch CL, Ciufo S, Domrachev M, Hotton CL, Kannan S, Khovanskaya R, Leipe D, Mcveigh R, O'Neill K, Robbertse B, Sharma S, Soussov V, Sullivan JP, Sun L, Turner S, Karsch-Mizrachi I. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020 Jan 1;2020:baaa062. doi: [https://doi.org/10.1093/database/baaa062 10.1093/database/baaa062].		Schoch CL, Ciufo S, Domrachev M, Hotton CL, Kannan S, Khovanskaya R, Leipe D, Mcveigh R, O'Neill K, Robbertse B, Sharma S, Soussov V, Sullivan JP, Sun L, Turner S, Karsch-Mizrachi I. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020 Jan 1;2020:baaa062. doi: [https://doi.org/10.1093/database/baaa062 10.1093/database/baaa062].

			===Plants:===
	Borsch, T., Berendsohn, W., Dalcin, E., Delmas, M., Demissew, S., Elliott, A., Fritsch, P., Fuchs, A., Geltman, D., Güner, A., Haevermans, T., Knapp, S., le Roux, M. M., Loizeau, P.-A., Miller, C., Miller, J., Miller, J. T., Palese, R., Paton, A., & Zamora, N. (2020). World Flora Online: placing taxonomists at the heart of a definitive and comprehensive global resource on the world’s plants. Taxon, 69, 1311–1341. doi: [https://doi.org/10.1002/tax.12373 https://doi.org/10.1002/tax.12373]		Borsch, T., Berendsohn, W., Dalcin, E., Delmas, M., Demissew, S., Elliott, A., Fritsch, P., Fuchs, A., Geltman, D., Güner, A., Haevermans, T., Knapp, S., le Roux, M. M., Loizeau, P.-A., Miller, C., Miller, J., Miller, J. T., Palese, R., Paton, A., & Zamora, N. (2020). World Flora Online: placing taxonomists at the heart of a definitive and comprehensive global resource on the world’s plants. Taxon, 69, 1311–1341. doi: [https://doi.org/10.1002/tax.12373 https://doi.org/10.1002/tax.12373]

			Govaerts, R., Nic Lughadha, E., Black, N., Turner, R. & Paton, A. 2021: The World Checklist of Vascular Plants, a continuously updated resource for exploring global plant diversity. Sci Data 8, 215 (2021). doi: [https://doi.org/10.1038/s41597-021-00997-6 https://doi.org/10.1038/s41597-021-00997-6]

	==On name and taxon identifiers==		==On name and taxon identifiers==

WalterBerendsohn at 14:13, 26 July 2023

2023-07-26T14:13:54Z

← Older revision		Revision as of 16:13, 26 July 2023
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	Döring, M., Jeppesen, T., & Bánki, O. (2022). Introducing ChecklistBank: An index and repository for taxonomic data. Biodiversity Information Science and Standards, 6, e93938. doi: [https://doi.org/10.3897/biss.6.93938 https://doi.org/10.3897/biss.6.93938]		Döring, M., Jeppesen, T., & Bánki, O. (2022). Introducing ChecklistBank: An index and repository for taxonomic data. Biodiversity Information Science and Standards, 6, e93938. doi: [https://doi.org/10.3897/biss.6.93938 https://doi.org/10.3897/biss.6.93938]

			Schoch CL, Ciufo S, Domrachev M, Hotton CL, Kannan S, Khovanskaya R, Leipe D, Mcveigh R, O'Neill K, Robbertse B, Sharma S, Soussov V, Sullivan JP, Sun L, Turner S, Karsch-Mizrachi I. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020 Jan 1;2020:baaa062. doi: [https://doi.org/10.1093/database/baaa062 10.1093/database/baaa062].

	Borsch, T., Berendsohn, W., Dalcin, E., Delmas, M., Demissew, S., Elliott, A., Fritsch, P., Fuchs, A., Geltman, D., Güner, A., Haevermans, T., Knapp, S., le Roux, M. M., Loizeau, P.-A., Miller, C., Miller, J., Miller, J. T., Palese, R., Paton, A., & Zamora, N. (2020). World Flora Online: placing taxonomists at the heart of a definitive and comprehensive global resource on the world’s plants. Taxon, 69, 1311–1341. doi: [https://doi.org/10.1002/tax.12373 https://doi.org/10.1002/tax.12373]		Borsch, T., Berendsohn, W., Dalcin, E., Delmas, M., Demissew, S., Elliott, A., Fritsch, P., Fuchs, A., Geltman, D., Güner, A., Haevermans, T., Knapp, S., le Roux, M. M., Loizeau, P.-A., Miller, C., Miller, J., Miller, J. T., Palese, R., Paton, A., & Zamora, N. (2020). World Flora Online: placing taxonomists at the heart of a definitive and comprehensive global resource on the world’s plants. Taxon, 69, 1311–1341. doi: [https://doi.org/10.1002/tax.12373 https://doi.org/10.1002/tax.12373]

	==On name and taxon identifiers==		==On name and taxon identifiers==
			Anonymous 2023: Wikidata - List of taxon identifiers. [https://en.wikipedia.org/wiki/Template:Taxonbar/doc#Taxon_identifiers https://en.wikipedia.org/wiki/Template:Taxonbar/doc#Taxon_identifiers]

	Page R. D. M. 2023: Ten years and a million links: building a global taxonomic library connecting persistent identifiers for names, publications and people		Page R. D. M. 2023: Ten years and a million links: building a global taxonomic library connecting persistent identifiers for names, publications and people
	doi: [https://doi.org/10.1101/2023.05.29.542697 https://doi.org/10.1101/2023.05.29.542697]		doi: [https://doi.org/10.1101/2023.05.29.542697 https://doi.org/10.1101/2023.05.29.542697]

WalterBerendsohn at 14:00, 26 July 2023

2023-07-26T14:00:13Z

← Older revision		Revision as of 16:00, 26 July 2023
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			(Recent review publications - please also refer to references within)

	==On taxonomic aggregators (global species lists) and the aggregation process==		==On taxonomic aggregators (global species lists) and the aggregation process==
	Garnett, S. T., Christidis, L., Conix, S., Costello, M. J., Zachos, F. E., Bánki, O. S., Bao, Y., Barik, S. K., Buckeridge, J. S., Hobern, D. & Lien, A. (2020). Principles for creating a single authoritative list of the world’s species. PLoS Biology, 18(7), e3000736. doi: [https://doi.org/10.1371/journal.pbio.3000736 https://doi.org/10.1371/journal.pbio.3000736]		Garnett, S. T., Christidis, L., Conix, S., Costello, M. J., Zachos, F. E., Bánki, O. S., Bao, Y., Barik, S. K., Buckeridge, J. S., Hobern, D. & Lien, A. (2020). Principles for creating a single authoritative list of the world’s species. PLoS Biology, 18(7), e3000736. doi: [https://doi.org/10.1371/journal.pbio.3000736 https://doi.org/10.1371/journal.pbio.3000736]

	Hobern, D., Barik, S. K., Christidis, L., Garnett, S. T. Kirk, P., Orrell, T. M., Pape, T., Pyle, R. L., Thiele, K. R., Zachos, F. E., & Bánki, O. (2021). Towards a global list of accepted species VI. The Catalogue of Life checklist. Org Divers Evol. doi: [https://doi.org/10.1007/s13127-021-00516-w https://doi.org/10.1007/s13127-021-00516-w]		Hobern, D., Barik, S. K., Christidis, L., Garnett, S. T. Kirk, P., Orrell, T. M., Pape, T., Pyle, R. L., Thiele, K. R., Zachos, F. E., & Bánki, O. (2021). Towards a global list of accepted species VI. The Catalogue of Life checklist. Org Divers Evol. doi: [https://doi.org/10.1007/s13127-021-00516-w https://doi.org/10.1007/s13127-021-00516-w]

			Döring, M., Jeppesen, T., & Bánki, O. (2022). Introducing ChecklistBank: An index and repository for taxonomic data. Biodiversity Information Science and Standards, 6, e93938. doi: [https://doi.org/10.3897/biss.6.93938 https://doi.org/10.3897/biss.6.93938]

	Borsch, T., Berendsohn, W., Dalcin, E., Delmas, M., Demissew, S., Elliott, A., Fritsch, P., Fuchs, A., Geltman, D., Güner, A., Haevermans, T., Knapp, S., le Roux, M. M., Loizeau, P.-A., Miller, C., Miller, J., Miller, J. T., Palese, R., Paton, A., & Zamora, N. (2020). World Flora Online: placing taxonomists at the heart of a definitive and comprehensive global resource on the world’s plants. Taxon, 69, 1311–1341. doi: [https://doi.org/10.1002/tax.12373 https://doi.org/10.1002/tax.12373]		Borsch, T., Berendsohn, W., Dalcin, E., Delmas, M., Demissew, S., Elliott, A., Fritsch, P., Fuchs, A., Geltman, D., Güner, A., Haevermans, T., Knapp, S., le Roux, M. M., Loizeau, P.-A., Miller, C., Miller, J., Miller, J. T., Palese, R., Paton, A., & Zamora, N. (2020). World Flora Online: placing taxonomists at the heart of a definitive and comprehensive global resource on the world’s plants. Taxon, 69, 1311–1341. doi: [https://doi.org/10.1002/tax.12373 https://doi.org/10.1002/tax.12373]
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	==On the stability of taxonomies (names and taxonomic concepts)==		==On the stability of taxonomies (names and taxonomic concepts)==
	Thiele, K., Conix, S., Pyle, R. L., Barik, S. K., Christidis, L., Costello, M. J., van Dijk, P. P., Kirk, P., Lien, A., Thomson, S. A., Zachos, F. E., Zhang, Z.-Q., Garnett, S. T. (2021). Towards a global list of accepted species I. Why taxonomists sometimes disagree, and why this matters. Organisms Diversity & Evolution. doi: [https://doi.org/10.1007/s13127-021-00495-y https://doi.org/10.1007/s13127-021-00495-y]		Thiele, K., Conix, S., Pyle, R. L., Barik, S. K., Christidis, L., Costello, M. J., van Dijk, P. P., Kirk, P., Lien, A., Thomson, S. A., Zachos, F. E., Zhang, Z.-Q., Garnett, S. T. (2021). Towards a global list of accepted species I. Why taxonomists sometimes disagree, and why this matters. Organisms Diversity & Evolution. doi: [https://doi.org/10.1007/s13127-021-00495-y https://doi.org/10.1007/s13127-021-00495-y]

	Geoffroy, M., & Berendsohn, W. G. (2003). The concept problem in taxonomy: Importance, components, approaches. In: MoReTax: Handling factual information linked to taxonomic concepts in biology (Berendsohn WG, ed.). Schriftenreihe für Vegetationskunde, Federal Agency for Nature Conservation, Bonn, Germany. 39, 5–14. [https://www.researchgate.net/publication/285456910_The_concept_problem_in_taxonomy_Importance_components_approaches#fullTextFileContent PDF].


	Pyle, R. L., Barik, S. K., Christidis, L., Conix, S., Costello, M. J., van Dijk, P. P., Garnett, S. T., Hobern, D., Kirk, P. M., Lien, A. M., Orrell, T. M., Remsen, D., Thomson, S. A., Wambiji, N., Zachos, F. E., Zhang, Z-Q., Thiele, K. R. (2021). Towards a global list of accepted species V. The devil is in the details. Organisms Diversity & Evolution.		Pyle, R. L., Barik, S. K., Christidis, L., Conix, S., Costello, M. J., van Dijk, P. P., Garnett, S. T., Hobern, D., Kirk, P. M., Lien, A. M., Orrell, T. M., Remsen, D., Thomson, S. A., Wambiji, N., Zachos, F. E., Zhang, Z-Q., Thiele, K. R. (2021). Towards a global list of accepted species V. The devil is in the details. Organisms Diversity & Evolution.

WalterBerendsohn at 13:33, 26 July 2023

2023-07-26T13:33:49Z

← Older revision		Revision as of 15:33, 26 July 2023
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	Hobern, D., Barik, S. K., Christidis, L., Garnett, S. T. Kirk, P., Orrell, T. M., Pape, T., Pyle, R. L., Thiele, K. R., Zachos, F. E., & Bánki, O. (2021). Towards a global list of accepted species VI. The Catalogue of Life checklist. Org Divers Evol. doi: [https://doi.org/10.1007/s13127-021-00516-w https://doi.org/10.1007/s13127-021-00516-w]		Hobern, D., Barik, S. K., Christidis, L., Garnett, S. T. Kirk, P., Orrell, T. M., Pape, T., Pyle, R. L., Thiele, K. R., Zachos, F. E., & Bánki, O. (2021). Towards a global list of accepted species VI. The Catalogue of Life checklist. Org Divers Evol. doi: [https://doi.org/10.1007/s13127-021-00516-w https://doi.org/10.1007/s13127-021-00516-w]



	Borsch, T., Berendsohn, W., Dalcin, E., Delmas, M., Demissew, S., Elliott, A., Fritsch, P., Fuchs, A., Geltman, D., Güner, A., Haevermans, T., Knapp, S., le Roux, M. M., Loizeau, P.-A., Miller, C., Miller, J., Miller, J. T., Palese, R., Paton, A., & Zamora, N. (2020). World Flora Online: placing taxonomists at the heart of a definitive and comprehensive global resource on the world’s plants. Taxon, 69, 1311–1341. doi: [https://doi.org/10.1002/tax.12373 https://doi.org/10.1002/tax.12373]		Borsch, T., Berendsohn, W., Dalcin, E., Delmas, M., Demissew, S., Elliott, A., Fritsch, P., Fuchs, A., Geltman, D., Güner, A., Haevermans, T., Knapp, S., le Roux, M. M., Loizeau, P.-A., Miller, C., Miller, J., Miller, J. T., Palese, R., Paton, A., & Zamora, N. (2020). World Flora Online: placing taxonomists at the heart of a definitive and comprehensive global resource on the world’s plants. Taxon, 69, 1311–1341. doi: [https://doi.org/10.1002/tax.12373 https://doi.org/10.1002/tax.12373]
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	Pyle, R. L., Barik, S. K., Christidis, L., Conix, S., Costello, M. J., van Dijk, P. P., Garnett, S. T., Hobern, D., Kirk, P. M., Lien, A. M., Orrell, T. M., Remsen, D., Thomson, S. A., Wambiji, N., Zachos, F. E., Zhang, Z-Q., Thiele, K. R. (2021). Towards a global list of accepted species V. The devil is in the details. Organisms Diversity & Evolution.		Pyle, R. L., Barik, S. K., Christidis, L., Conix, S., Costello, M. J., van Dijk, P. P., Garnett, S. T., Hobern, D., Kirk, P. M., Lien, A. M., Orrell, T. M., Remsen, D., Thomson, S. A., Wambiji, N., Zachos, F. E., Zhang, Z-Q., Thiele, K. R. (2021). Towards a global list of accepted species V. The devil is in the details. Organisms Diversity & Evolution.

			==Standards==
			Döring, M., & Ower, G. D. (2019). The Catalogue of Life Data Package - A new format for exchanging nomenclatural and taxonomic information. Biodiversity Information Science and Standards, 3, e38711. [https://doi.org/10.3897/biss.3.38771 https://doi.org/10.3897/biss.3.38771]

Further reading - Revision history