Difference between revisions of "Best Practice Handbook"

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(Data Archiving)
(Data Archiving)
Line 23: Line 23:
 
***ABCD Mapping (see BioCASE documentation) plus additional examples
 
***ABCD Mapping (see BioCASE documentation) plus additional examples
 
** XML Export from BioCASE provider software (mention other like Pentaho Kettle?)
 
** XML Export from BioCASE provider software (mention other like Pentaho Kettle?)
** Import to reBiND Framework
+
** Creating a new project and uploading data to the reBiND Framework
 +
*** Logon
 +
*** Create project
 
*** Import from XML file system
 
*** Import from XML file system
 
*** Connect to BioCASE and upload XML
 
*** Connect to BioCASE and upload XML

Revision as of 18:15, 8 October 2014

Introduction

System Installation and Administration

Data Archiving

  • Workflow (An overview of the pipeline)
    • Data Preparation
      • Prepare the content for ABCD mapping: resolve abbreviations, add units, concatenate atomised scientific name, additional information from data documentation, add metadata, denormalise
      • ABCD Mapping (see BioCASE documentation) plus additional examples
    • XML Export from BioCASE provider software (mention other like Pentaho Kettle?)
    • Creating a new project and uploading data to the reBiND Framework
      • Logon
      • Create project
      • Import from XML file system
      • Connect to BioCASE and upload XML
    • Validation and Corrections (An overview of the reBiND interface showing correction and validation)
      • Validation
      • Running the automated correction
        • Default correction (selecting existing correction module)
        • Modifiy correction
        • Add additional modules
    • Reviewing the XML file (Some notes on manual review)
    • Entering metadata (An overview of the different forms in the Metadata Editor tool)
    • Publishing the dataset

Data Access and Search

  • Search via reBiND web interface
  • Search via Biodiversity networks (GBIF)

Case Studies

  • Case studies with single data sets from different providers ( reBiND stories)
  • General observations

Data Rescue (outdated software and hardware)

Supporting data preparation

Technical Background

FAQ

Glossary

References