Difference between revisions of "Best Practice Handbook"

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(System Installation and Administration)
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*** Import from XML file system
 
*** Import from XML file system
 
*** Connect to BioCASE and upload XML
 
*** Connect to BioCASE and upload XML
** Validation and Corrections ([http://rebind.bgbm.org/first_screenshots| An overview of the reBiND interface showing correction and validation])
+
** Validation and Corrections ([http://rebind.bgbm.org/first_screenshots An overview of the reBiND interface showing correction and validation])
 
*** Validation
 
*** Validation
 
*** Running the automated correction
 
*** Running the automated correction
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**** Add additional modules
 
**** Add additional modules
 
** Reviewing the XML file
 
** Reviewing the XML file
** Entering metadata ([http://rebind.bgbm.org/metadata_capture| An overview of the different forms in the Metadata Editor tool])
+
** Entering metadata ([http://rebind.bgbm.org/metadata_capture An overview of the different forms in the Metadata Editor tool])
 
** Publishing the dataset
 
** Publishing the dataset
  

Revision as of 12:03, 12 June 2014

Introduction

System Installation and Administration

Data Archiving

  • Workflow
    • Data Preparation
      • Prepare the content for ABCD mapping: resolve abbreviations, add units, concatenate atomised scientific name, additional information from data documentation, add metadata, denormalise
      • ABCD Mapping (see BioCASE documentation) plus additional examples
    • XML Export from BioCASE provider software (mention other like Pentaho Kettle?)
    • Import to reBiND Framework
      • Import from XML file system
      • Connect to BioCASE and upload XML
    • Validation and Corrections (An overview of the reBiND interface showing correction and validation)
      • Validation
      • Running the automated correction
        • Default correction (selecting existing correction module)
        • Modifiy corrections
        • Add additional modules
    • Reviewing the XML file
    • Entering metadata (An overview of the different forms in the Metadata Editor tool)
    • Publishing the dataset

Data Access and Search

  • Search via reBiND web interface
  • Search via Biodiversity networks (GBIF)

Case Studies

  • Case studies with single data sets from different providers
  • General observations

Data Rescue (outdated software and hardware)


Supporting data preparation

Technical Background

  • eXist
  • XQuery
  • ABCD
  • EML


FAQ

Glossary

References