ENA Annotations - Revision history

GabiDroege: GabiDroege moved page Internal:ENA Annotations to ENA Annotations

2021-04-20T09:00:07Z

GabiDroege moved page Internal:ENA Annotations to ENA Annotations

← Older revision	Revision as of 11:00, 20 April 2021
(No difference)

GabiDroege at 08:28, 30 March 2021

2021-03-30T08:28:07Z

← Older revision		Revision as of 10:28, 30 March 2021
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	CharSet 28S_rRNA = 724-747;		CharSet 28S_rRNA = 724-747;
			</code>

			=rbcL=
			<code>
			CharSet rbcL_CDS = 1-957; must be a multiple of 3!

			CharSet rbcL_gene = 1-959;
	</code>		</code>

GabiDroege: /* trnK-matK */

2021-03-18T10:54:48Z

trnK-matK

← Older revision		Revision as of 12:54, 18 March 2021
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	CharSet trnK_tRNA = 1-3 2563-2597;		CharSet trnK_tRNA = 1-3 2563-2597;

	CharSet trnK_intron = 4-~~2562~~;		CharSet trnK_intron = 4-704;

	CharSet matK_gene = 705-2240;		CharSet matK_gene = 705-2240;

GabiDroege at 10:33, 16 March 2021

2021-03-16T10:33:55Z

← Older revision		Revision as of 12:33, 16 March 2021
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	=trnG=		=trnG=
			<code>
	CharSet trnG_tRNA = 1-13;		CharSet trnG_tRNA = 1-13;

	CharSet trnG_exon = 1-13;		CharSet trnG_exon = 1-13;

	CharSet trnGIGS_misc_feature = 14-1103; change this to "trnG-trnS intergenic spacer" in embl-File before submission		CharSet trnGIGS_misc_feature = 14-1103; change this to "trnG-trnS intergenic spacer" in embl-File before submission
			</code>

	=ITS=		=ITS=
			<code>
	CharSet 18S_rRNA = 1-3;		CharSet 18S_rRNA = 1-3;

	CharSet ITS1_misc_RNA = 4-303;		CharSet ITS1_misc_RNA = 4-303;

	CharSet 58S_misc_feature = 304-459; change this to "5.8S" in embl-File before submission		CharSet 58S_misc_feature = 304-459; change this to "5.8S" in embl-File before submission

	CharSet ITS2_misc_RNA = 460-723;		CharSet ITS2_misc_RNA = 460-723;

	CharSet 28S_rRNA = 724-747;		CharSet 28S_rRNA = 724-747;
			</code>

	=rpl16=		=rpl16=
			<code>
	CharSet rpl16_intron = 1-1120;		CharSet rpl16_intron = 1-1120;

	CharSet rpl16_gene = 1-1120;		CharSet rpl16_gene = 1-1120;

	CharSet rpl16_exon = 1121-1123;		CharSet rpl16_exon = 1121-1123;
			</code>

	=trnL-trnF=		=trnL-trnF=
			<code>
	CharSet trnL_exon = 1-17 575-624;		CharSet trnL_exon = 1-17 575-624;

	CharSet trnL_gene = 1-17 575-624;		CharSet trnL_gene = 1-17 575-624;

	CharSet trnL_tRNA = 1-17 575-624;		CharSet trnL_tRNA = 1-17 575-624;

	CharSet trnL_intron = 18-574;		CharSet trnL_intron = 18-574;

	CharSet trnLtrnF_misc_feature = 625-989; change this to "trnL-trnF" in embl-File before submission		CharSet trnLtrnF_misc_feature = 625-989; change this to "trnL-trnF" in embl-File before submission

	CharSet trnF_gene = 990-1049;		CharSet trnF_gene = 990-1049;

	CharSet trnF_tRNA = 990-1049;		CharSet trnF_tRNA = 990-1049;
			</code>

	=trnK-matK=		=trnK-matK=
			<code>
	CharSet trnK_exon = 1-3 2563-2597;		CharSet trnK_exon = 1-3 2563-2597;

	CharSet trnK_gene = 1-3 2563-2597;		CharSet trnK_gene = 1-3 2563-2597;

	CharSet trnK_tRNA = 1-3 2563-2597;		CharSet trnK_tRNA = 1-3 2563-2597;

	CharSet trnK_intron = 4-2562;		CharSet trnK_intron = 4-2562;

	CharSet matK_gene = 705-2240;		CharSet matK_gene = 705-2240;

	CharSet matK_CDS = 705-2240; (optional)		CharSet matK_CDS = 705-2240; (optional)

	CharSet trnKpsbA_misc_feature = 2598-2839; change this to "trnK-psbA" in embl-File before submission		CharSet trnKpsbA_misc_feature = 2598-2839; change this to "trnK-psbA" in embl-File before submission

	CharSet psbA_gene = 2840-2897;		CharSet psbA_gene = 2840-2897;

	CharSet psbA_CDS = 2840-2897; (optional, must be a multiple of 3!)		CharSet psbA_CDS = 2840-2897; (optional, must be a multiple of 3!)
			</code>

GabiDroege: Created page with "Annotations must follow the INSDC vocabulary (http://www.insdc.org/files/feature_table.html): =trnG= CharSet trnG_tRNA = 1-13; CharSet trnG_exon = 1-13; CharSet trnGIGS_misc_..."

2021-03-16T10:31:43Z

Created page with "Annotations must follow the INSDC vocabulary (http://www.insdc.org/files/feature_table.html): =trnG= CharSet trnG_tRNA = 1-13; CharSet trnG_exon = 1-13; CharSet trnGIGS_misc_..."

New page

Annotations must follow the INSDC vocabulary (http://www.insdc.org/files/feature_table.html):

=trnG=
CharSet trnG_tRNA = 1-13;
CharSet trnG_exon = 1-13;
CharSet trnGIGS_misc_feature = 14-1103; change this to "trnG-trnS intergenic spacer" in embl-File before submission

=ITS=
CharSet 18S_rRNA = 1-3;
CharSet ITS1_misc_RNA = 4-303;
CharSet 58S_misc_feature = 304-459; change this to "5.8S" in embl-File before submission
CharSet ITS2_misc_RNA = 460-723;
CharSet 28S_rRNA = 724-747;

=rpl16=
CharSet rpl16_intron = 1-1120;
CharSet rpl16_gene = 1-1120;
CharSet rpl16_exon = 1121-1123;

=trnL-trnF=
CharSet trnL_exon = 1-17 575-624;
CharSet trnL_gene = 1-17 575-624;
CharSet trnL_tRNA = 1-17 575-624;
CharSet trnL_intron = 18-574;
CharSet trnLtrnF_misc_feature = 625-989; change this to "trnL-trnF" in embl-File before submission
CharSet trnF_gene = 990-1049;
CharSet trnF_tRNA = 990-1049;

=trnK-matK=
CharSet trnK_exon = 1-3 2563-2597;
CharSet trnK_gene = 1-3 2563-2597;
CharSet trnK_tRNA = 1-3 2563-2597;
CharSet trnK_intron = 4-2562;
CharSet matK_gene = 705-2240;
CharSet matK_CDS = 705-2240; (optional)
CharSet trnKpsbA_misc_feature = 2598-2839; change this to "trnK-psbA" in embl-File before submission
CharSet psbA_gene = 2840-2897;
CharSet psbA_CDS = 2840-2897; (optional, must be a multiple of 3!)