Difference between revisions of "Indexed fields"

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(Amplification and accession number)
(GGBN terms)
Line 146: Line 146:
  
 
==GGBN terms==
 
==GGBN terms==
UnitExtension/ggbn:GGBN/ggbn:ratioOfAbsorbance260_230<BR>
+
*abcd ggbn
UnitExtension/ggbn:GGBN/ggbn:ratioOfAbsorbance260_280<BR>
+
**UnitExtension/ggbn:GGBN/ggbn:ratioOfAbsorbance260_230<BR>
UnitExtension/ggbn:GGBN/ggbn:concentration<BR>
+
**UnitExtension/ggbn:GGBN/ggbn:ratioOfAbsorbance260_280<BR>
UnitExtension/ggbn:GGBN/ggbn:qualityCheckDate<BR>
+
**UnitExtension/ggbn:GGBN/ggbn:concentration<BR>
 +
**UnitExtension/ggbn:GGBN/ggbn:qualityCheckDate<BR>
 +
 
 +
*abcd dba
 +
**dna:DNASample/dna:Tissue
 +
**dna:DNASample/dna:Preservation
 +
**dna:DNASample/dna:ExtractionStaff
 +
**dna:DNASample/dna:ExtractionDate
 +
**dna:DNASample/dna:ExtractionMethod
 +
**dna:DNASample/dna:RatioOfAbsorbance260_230
 +
**dna:DNASample/dna:RatioOfAbsorbance260_280
 +
**dna:DNASample/dna:Concentration + unit
 +
**dna:DNASample/dna:Type
 +
**dna:DNASample/dna:QualityCheckDate
 +
 
 +
 
 
===Amplification and accession number===
 
===Amplification and accession number===
 
*UnitExtension/ggbn:GGBN/ggbn:Amplifications/ggbn:amplification<BR>
 
*UnitExtension/ggbn:GGBN/ggbn:Amplifications/ggbn:amplification<BR>
Line 181: Line 196:
 
Unit/SpecimenUnit/abcd21:Loan/abcd21:loanConditions<BR>
 
Unit/SpecimenUnit/abcd21:Loan/abcd21:loanConditions<BR>
 
Unit/SpecimenUnit/abcd21:Loan/abcd21:Disposition<BR>
 
Unit/SpecimenUnit/abcd21:Loan/abcd21:Disposition<BR>
 +
 +
*abcd dna
 +
dna:DNASample/dna:BlockedUntil
 +
 
===Permits===
 
===Permits===
 
*Unit/abcd21:Gathering/abcd21:Permits/abcd21:PermitInfo<BR>
 
*Unit/abcd21:Gathering/abcd21:Permits/abcd21:PermitInfo<BR>

Revision as of 16:31, 10 November 2015

ABCD

Gathering Agent

GatheringAgent/Person/FullName
GatheringAgent/AgentText
GatheringAgent@sequence

Agents/AgentText
Agents/GatheringAgentsText

Gathering coordinates

SiteCoordinates/CoordinatesLatLong/LatitudeDecimal
SiteCoordinates/CoordinatesLatLong/LongitudeDecimal
SiteCoordinates/CoordinatesLatLong/VerbatimLatitude
SiteCoordinates/CoordinatesLatLong/VerbatimLongitude
SiteCoordinates/CoordinatesLatLong/CoordinateErrorDistanceInMeters
SiteCoordinates/CoordinatesLatLong/SpatialDatum
SiteCoordinates/CoordinateMethod

Gathering details

Gathering/Country/ISO3166Code
Gathering/Country/NameDerived
Gathering/Country/Name
Gathering/LocalityText
Gathering/EstablishmentMeans
Gathering/Depth/MeasurementOrFactAtomised/Accuracy
Gathering/Depth/MeasurementOrFactAtomised/UpperValue
Gathering/Depth/MeasurementOrFactAtomised/LowerValue
Gathering/Depth/MeasurementOrFactText
Gathering/Altitude/MeasurementOrFactAtomised/UpperValue
Gathering/Altitude/MeasurementOrFactAtomised/LowerValue
Gathering/Altitude/MeasurementOrFactAtomised/Accuracy
Gathering/Altitude/MeasurementOrFactText
Gathering/DateTime/ISODateTimeBegin
Gathering/DateTime/ISODateTimeEnd
Gathering/DateTime/DateText
NamedArea/AreaName


Stratigraphy

  • ChronostratigraphicTerms, BiostratigraphicTerms, LithostratigraphicTerms

Gathering/Stratigraphy/StratigraphyText
ChronostratigraphicTerm/Comment
ChronostratigraphicTerm/Domain
ChronostratigraphicTerm/SourceName
ChronostratigraphicTerm/SourceNameVersion
ChronostratigraphicTerm/Term

BiostratigraphicTerm/Comment
BiostratigraphicTerm/Domain
BiostratigraphicTerm/SourceName
BiostratigraphicTerm/SourceNameVersion
BiostratigraphicTerm/Term

LithostratigraphicTerm/Comment
LithostratigraphicTerm/Domain
LithostratigraphicTerm/SourceName
LithostratigraphicTerm/SourceNameVersion
LithostratigraphicTerm/Term

  • (UnitExtension/UnitHostRock/HostRockText, UnitExtension/UnitHostRock/HostRockStratigraphy/ChronostratigraphicAttributions/ChronostratigraphicAttribution, UnitExtension/UnitHostRock/HostRockStratigraphy/LithostratigraphicAttributions/LithostratigraphicAttribution, UnitExtension/UnitHostRock/HostRockStratigraphy/BiostratigraphicAttribution)

ChronostratigraphicAttribution/ChronoStratigraphicDivision
ChronostratigraphicAttribution/ChronostratigraphicName

LithostratigraphicAttribution/LithostratigraphicDivision
LithostratigraphicAttribution/LithostratigraphicName

BiostratigraphicAttribution/BiostratigraphicDivision
BiostratigraphicAttribution/BiostratigraphicName


Higher taxon

HigherTaxon/HigherTaxonName
HigherTaxon/HigherTaxonRank

Identification

Identification/Result/TaxonIdentified/ScientificName/FullScientificNameString
Identification/Result/TaxonIdentified/InformalNameString
Identification/Result/Extension/MineralRockIdentified/ClassifiedName/FullScientificNameString
Identification/PreferredFlag
Identification/Date/ISODateTimeBegin
Identification/Date/ISODateTimeEnd
Identification/Date/DateText
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/GenusOrMonomial
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/SubGenus
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/InfraspecificEpithet
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/SubspeciesEpithet
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/FirstEpithet
Identification/Result/TaxonIdentified/ScientificName/NameAtomised/SpeciesEpithet
Identifier/PersonName/FullName
Identifiers/IdentifiersText

Measurements or facts

  • abcd 2.1
    • abcd21:Unit/abcd21:MeasurementsOrFacts/abcd21:MeasurementOrFact
    • abcd21:SpecimenUnit/abcd21:SpecimenMeasurementsOrFacts/abcd21:SpecimenMeasurementOrFact
    • abcd21:SiteMeasurementsOrFacts/abcd21:SiteMeasurementOrFact
  • abcd 2.06
    • abcd:Unit/abcd:MeasurementsOrFacts/abcd:MeasurementOrFact
    • abcd:SiteMeasurementsOrFacts/abcd:SiteMeasurementOrFact


measurementOrFactStr=MeasurementOrFact or SiteMeasurementOrFact or SpecimenMeasurementOrFact

measurementOrFactStr/MeasurementOrFactAtomised/MeasuredBy
measurementOrFactStr/MeasurementOrFactAtomised/MeasurementDateTime
measurementOrFactStr/MeasurementOrFactAtomised/Duration
measurementOrFactStr/MeasurementOrFactAtomised/Method
measurementOrFactStr/MeasurementOrFactAtomised/Parameter
measurementOrFactStr/MeasurementOrFactAtomised/AppliesTo
measurementOrFactStr/MeasurementOrFactAtomised/LowerValue
measurementOrFactStr/MeasurementOrFactAtomised/UpperValue
measurementOrFactStr/MeasurementOrFactAtomised/UnitOfMeasurement
measurementOrFactStr/MeasurementOrFactAtomised/Accuracy
measurementOrFactStr/MeasurementOrFactAtomised/MeasurementOrFactReference
measurementOrFactStr/MeasurementOrFactAtomised/IsQuantitative
measurementOrFactStr/MeasurementOrFactText

Multimedia

  • abcd 2.1:MultiMediaObject
  • abcd 2.06: MultiMediaObject


MultiMediaObject/Format
MultiMediaObject/fileFormat
MultiMediaObject/ProductURI
MultiMediaObject/FileURI
Copyright/Text
TermsOfUse/Text
License/Text

Unit

Unit/RecordURI
Unit/CollectorsFieldNumber
Unit/RecordBasis
Unit/KindOfUnit
Unit/SourceInstitutionID
Unit/SourceID
Unit/UnitGUID
NomenclaturalTypeDesignation/NomenclaturalReference/TitleCitation
NomenclaturalTypeDesignation/TypeStatus
NomenclaturalTypeDesignation/VerificationNotes
NomenclaturalTypeDesignation/TypifiedName/FullScientificNameString

Sequences

Unit/Sequences/Sequence
Sequence/Database
Sequence/ID-in-Database

GGBN terms

  • abcd ggbn
    • UnitExtension/ggbn:GGBN/ggbn:ratioOfAbsorbance260_230
    • UnitExtension/ggbn:GGBN/ggbn:ratioOfAbsorbance260_280
    • UnitExtension/ggbn:GGBN/ggbn:concentration
    • UnitExtension/ggbn:GGBN/ggbn:qualityCheckDate
  • abcd dba
    • dna:DNASample/dna:Tissue
    • dna:DNASample/dna:Preservation
    • dna:DNASample/dna:ExtractionStaff
    • dna:DNASample/dna:ExtractionDate
    • dna:DNASample/dna:ExtractionMethod
    • dna:DNASample/dna:RatioOfAbsorbance260_230
    • dna:DNASample/dna:RatioOfAbsorbance260_280
    • dna:DNASample/dna:Concentration + unit
    • dna:DNASample/dna:Type
    • dna:DNASample/dna:QualityCheckDate


Amplification and accession number

  • UnitExtension/ggbn:GGBN/ggbn:Amplifications/ggbn:amplification
  • abcd ggbn
    • ggbn:amplification/ggbn:marker
    • ggbn:sequencing
    • ggbn:geneticAccession/ggbn:geneticAccessionNumber
    • ggbn:geneticAccession/ggbn:geneticAccessionNumberURI
    • ggbn:geneticAccession/ggbn:BOLDProcessID
  • abcd dna
    • dna:Amplification/dna:GeneticLocus
    • dna:Sequencing/dna:GenBankNumber
    • dna:Sequencing/dna:GenBankNumber-URI
  • abcd 2.06
    • Unit/SpecimenUnit/Accessions/AccessionNumber
  • abcd2.1
    • Unit/SpecimenUnit/Accessions/AccessionNumber
    • Unit/SpecimenUnit/Preparations/preparation/sampleDesignations/sampleDesignation

Preparation

  • Unit/abcd21:SpecimenUnit/abcd21:Preparations/abcd21:preparation

abcd21:preparation/abcd21:preparationType
abcd21:preparation/abcd21:preparationMaterials
abcd21:preparation/abcd21:preparationAgent/abcd21:Person/abcd21:FullName
abcd21:preparation/abcd21:preparationDate

Loan

Unit/SpecimenUnit/abcd21:Loan/abcd21:blockedUntil
Unit/SpecimenUnit/abcd21:Loan/abcd21:blocked
Unit/SpecimenUnit/abcd21:Loan/abcd21:loanConditions
Unit/SpecimenUnit/abcd21:Loan/abcd21:Disposition

  • abcd dna

dna:DNASample/dna:BlockedUntil

Permits

  • Unit/abcd21:Gathering/abcd21:Permits/abcd21:PermitInfo

abcd21:PermitInfo/abcd21:permitType
abcd21:PermitInfo/abcd21:permitStatus
abcd21:PermitInfo/abcd21:permitURI
abcd21:PermitInfo/abcd21:permitText

Preservation

  • abcd21:Unit/abcd21:SpecimenUnit/abcd21:Preservations

abcd21:preservation/abcd21:preservationType

Unit association

abcd21:UnitAssociation/abcd21:SourceInstitutionCode
abcd21:UnitAssociation/abcd21:SourceName
abcd21:UnitAssociation/abcd21:UnitID
abcd21:UnitAssociation/abcd21:AssociationType
abcd21:UnitAssociation/abcd21:Comment
abcd21:UnitAssociation/abcd21:DatasetAccessPoint

DarwinCore

DarwinCore Archive