Best Practice Handbook

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Revision as of 14:38, 11 June 2014 by AgnesKirchhoff (talk | contribs) (Data Archiving)
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Introduction

  • about reBiND
  • how to use this book

System Installation

  • Installing BioCASe Provider Software
  • Installing eXist
  • Installing reBiND Framework
  • Configuring eXist/reBiND Framework
  • Using a custom data format
  • Using the Correction Tool
  • Writing Custom Correction Modules
  • Using a different metadata format

Technical Background

  • eXist
  • XQuery
  • ABCD
  • EML

Data Archiving

  • workflow
    • Data Preparation
      • prepare the content for ABCD mapping: resolve abbreviations, add units, concatenate atomised scientific name, additional information from data documentation, add metadata, denormalise
      • ABCD Mapping (see BioCASE documentation) plus additional examples
    • XML Export from BioCASE provider software (mention other like Pentaho Kettle?)
    • import to reBiND Framework
      • import from XML file system
      • Connect to BioCASE and upload XML
    • Validation and Corrections
      • Validation
      • Running the automated correction
        • default correction (selecting existing correction module)
        • modifiy corrections
        • add additional modules
    • Reviewing the XML file
    • Entering metadata
    • publishing the dataset

Best Practice Documentation


Data Rescue, Preparation

Case Studies

Related Software Products

  • Data Splitter
  • Character Encoding Correcter
  • Stand-alone Correction Manager

Glossary

References