Difference between revisions of "Best Practice Handbook"

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(Data Archiving (Information for content administrators and contributing scientists))
(Data Archiving (Information for content administrators and contributing scientists))
 
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=reBiND Best Practice Handbook=
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==Introduction==
 
==Introduction==
* About reBiND
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* [[About reBiND]]
 
* [[Introduction|How to use this manual]]
 
* [[Introduction|How to use this manual]]
  
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==Data Archiving (Information for content administrators and contributing scientists) ==
 
==Data Archiving (Information for content administrators and contributing scientists) ==
  
** Data Preparation
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* [[Data_preparation|Data Preparation]]
** [[Data_upload_to_rebind_framework|Creating a new project and uploading data to the reBiND data portal]]
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* [[Creating_new_rebind_project|Creating a new project]]
** [[Validation_and_Corrections |Validation and Corrections]]
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* [[Data_upload_to_rebind_framework|Uploading data to the reBiND data portal - files less than 1000 ABCD units]]
** Reviewing the XML file ([[Architecture-Concept#Manual_Review_and_Corrections|Some notes on manual review]])
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* [[Exporting_XML_files_from_BPS| Uploading data to the reBiND data portal - files greater than 1000 ABCD units]]
** [[Entering_metadata |Entering metadata]]
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* [[Validation_and_Corrections |Validation and Corrections]]
** [[Publishing_and_searching_the_data |Publishing and searching the data]]
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* [[Manual_review_of_data |Manual review of the data file]]
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* [[Entering_metadata |Entering metadata]]
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* [[Publishing_and_searching_the_data |Publishing and searching the data]]
  
 
==Case Studies==
 
==Case Studies==
* Case studies with single data sets from different providers ([[ReBiND_Stories| reBiND stories]])
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* [[Case studies with single data sets from different providers ]]
* General observations
 
  
 
== Supporting data preparation  ==
 
== Supporting data preparation  ==
 
* [[Supporting_data_preparation_software|Software Products]]
 
* [[Supporting_data_preparation_software|Software Products]]
* [[Supporting procedures|Supporting_data_preparation_procedures]]
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* [[Supporting procedures|Supporting data preparation procedures]]
  
 
==Technical Background==
 
==Technical Background==
*eXist ([[Architecture-Concept#eXist|The role of eXist in the reBiND project]])
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*[[eXist_and_xquery|eXist and xquery]]
*XQuery
 
 
*[[Ecologial Metadata Language]]
 
*[[Ecologial Metadata Language]]
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*[[ABCD Access to Biological Collection Data, Standard]]
  
 
==Glossary==
 
==Glossary==
  
* [[Architecture-Concept#Terms|A description of some of the terms used in this manual]]
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* [[Glossary|A description of some of the terms used in this manual]]
  
 
==References==
 
==References==
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* Güntsch, A., Fichtmüller, D.,  Kirchhoff, A. & Berendsohn, W.G.: Efficient rescue of threatened biodiversity data using reBiND-workflows. In: Plant Biosystems, 146(4) (2012), S. 752-755, DOI:10.1080/11263504.2012.740086
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* The BioCASE Provider Software Documentation: http://wiki.bgbm.org/bps/index.php/Main_Page
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* BioCASE Biological Collection Access Service: http://www.biocase.org/
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* ABCD Schema (Access ot Biological Collection Data); ABCD 2.0 Concepts: http://wiki.tdwg.org/twiki/bin/view/ABCD/AbcdConcepts
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* GBIF (Global Biodiversity Information Facility): http://www.gbif.org/

Latest revision as of 15:57, 14 January 2015

reBiND Best Practice Handbook

Introduction

The reBiND workflow

System Installation and Administration (Technical information for administrators and IT specialists)

Data Archiving (Information for content administrators and contributing scientists)

Case Studies

Supporting data preparation

Technical Background

Glossary

References

  • Güntsch, A., Fichtmüller, D., Kirchhoff, A. & Berendsohn, W.G.: Efficient rescue of threatened biodiversity data using reBiND-workflows. In: Plant Biosystems, 146(4) (2012), S. 752-755, DOI:10.1080/11263504.2012.740086