Difference between revisions of "Best Practice Handbook"
From reBiND Documentation
LornaMorris (talk | contribs) (→Glossary) |
LornaMorris (talk | contribs) (→Data Archiving) |
||
| Line 18: | Line 18: | ||
==Data Archiving== | ==Data Archiving== | ||
| − | *Workflow | + | *Workflow ([Architecture-Concept#Overview|An overview of the pipeline]) |
** Data Preparation | ** Data Preparation | ||
***Prepare the content for ABCD mapping: resolve abbreviations, add units, concatenate atomised scientific name, additional information from data documentation, add metadata, denormalise | ***Prepare the content for ABCD mapping: resolve abbreviations, add units, concatenate atomised scientific name, additional information from data documentation, add metadata, denormalise | ||
| Line 30: | Line 30: | ||
*** Running the automated correction | *** Running the automated correction | ||
**** Default correction (selecting existing correction module) | **** Default correction (selecting existing correction module) | ||
| − | **** Modifiy | + | **** Modifiy correction |
**** Add additional modules | **** Add additional modules | ||
** Reviewing the XML file ([[Architecture-Concept#Manual_Review_and_Corrections|Some notes on manual review]]) | ** Reviewing the XML file ([[Architecture-Concept#Manual_Review_and_Corrections|Some notes on manual review]]) | ||
Revision as of 13:29, 12 June 2014
Contents
Introduction
- About reBiND
- How to use this manual
System Installation and Administration
- Installation
- Installing BioCASe Provider Software
- Installing eXist
- Installing reBiND Framework
- Configuring eXist/reBiND Framework
- Administration
- Management of reBiND data in the eXist database
- Rights management
- Documentation of Correction Modules
- Writing Custom Correction Modules (How to modify the correction configuration file)
- Using a different XML format
- Using a different metadata format
Data Archiving
- Workflow ([Architecture-Concept#Overview|An overview of the pipeline])
- Data Preparation
- Prepare the content for ABCD mapping: resolve abbreviations, add units, concatenate atomised scientific name, additional information from data documentation, add metadata, denormalise
- ABCD Mapping (see BioCASE documentation) plus additional examples
- XML Export from BioCASE provider software (mention other like Pentaho Kettle?)
- Import to reBiND Framework
- Import from XML file system
- Connect to BioCASE and upload XML
- Validation and Corrections (An overview of the reBiND interface showing correction and validation)
- Validation
- Running the automated correction
- Default correction (selecting existing correction module)
- Modifiy correction
- Add additional modules
- Reviewing the XML file (Some notes on manual review)
- Entering metadata (An overview of the different forms in the Metadata Editor tool)
- Publishing the dataset
- Data Preparation
Data Access and Search
- Search via reBiND web interface
- Search via Biodiversity networks (GBIF)
Case Studies
- Case studies with single data sets from different providers
- General observations
Data Rescue (outdated software and hardware)
- Software
- Identifying Unknown File Formats
- Conversion for selected file formats
- DataPerfect
- Paradox
- dBase
- Harvard Graphics
- Word 3 for DOS
- Excel to Access database
- Document new data formats for others
- Hardware
- 3.5" Floppies
- 5.25 " Floppies
Supporting data preparation
- Software Products
- Data Splitter
- Character Encoding Correcter
- Stand-alone Correction Manager
- Supporting procedures
Technical Background
- eXist
- XQuery
- ABCD
- EML
