Difference between revisions of "Best Practice Handbook"
From reBiND Documentation
(→Data Archiving) |
|||
| Line 14: | Line 14: | ||
* Using a different metadata format | * Using a different metadata format | ||
| − | + | ||
| − | |||
| − | |||
| − | |||
| − | |||
==Data Archiving== | ==Data Archiving== | ||
| Line 39: | Line 35: | ||
** publishing the dataset | ** publishing the dataset | ||
| − | == | + | ==Data Access and Search== |
| − | * | + | * Search via reBiND web interface |
| + | * Search via Biodiversity networks (GBIF) | ||
| + | ==Case Studies== | ||
| + | * Case studies with single data sets from different providers | ||
| + | * General observations | ||
| − | ==Data Rescue | + | ==Data Rescue (outdated software and hardware) == |
| − | * | + | *software |
** [[Identifying Unknown File Formats]] | ** [[Identifying Unknown File Formats]] | ||
** Conversion for [[File Type Overview|selected file formats]] | ** Conversion for [[File Type Overview|selected file formats]] | ||
| Line 57: | Line 57: | ||
** 3.5" Floppies | ** 3.5" Floppies | ||
** [[Reading 5.25" Floppy Disks|5.25 " Floppies]] | ** [[Reading 5.25" Floppy Disks|5.25 " Floppies]] | ||
| − | |||
| − | |||
| − | == | + | == supporting data preparation == |
| − | * Data Splitter | + | * Software Products |
| − | * Character Encoding Correcter | + | ** Data Splitter |
| − | * Stand-alone Correction Manager | + | ** Character Encoding Correcter |
| + | ** Stand-alone Correction Manager | ||
| + | * supporting procedures | ||
| + | ** [[Retrieving Geocoordinates From Points In Images]] | ||
| + | |||
| + | |||
| + | ==Technical Background== | ||
| + | *eXist | ||
| + | *XQuery | ||
| + | *ABCD | ||
| + | *EML | ||
| + | |||
| + | |||
| + | ==FAQ== | ||
==Glossary== | ==Glossary== | ||
==References== | ==References== | ||
Revision as of 14:53, 11 June 2014
Contents
Introduction
- about reBiND
- how to use this book
System Installation
- Installing BioCASe Provider Software
- Installing eXist
- Installing reBiND Framework
- Configuring eXist/reBiND Framework
- Using a custom data format
- Using the Correction Tool
- Documentation of Correction Modules
- Writing Custom Correction Modules
- Using a different metadata format
Data Archiving
- workflow
- Data Preparation
- prepare the content for ABCD mapping: resolve abbreviations, add units, concatenate atomised scientific name, additional information from data documentation, add metadata, denormalise
- ABCD Mapping (see BioCASE documentation) plus additional examples
- XML Export from BioCASE provider software (mention other like Pentaho Kettle?)
- import to reBiND Framework
- import from XML file system
- Connect to BioCASE and upload XML
- Validation and Corrections
- Validation
- Running the automated correction
- default correction (selecting existing correction module)
- modifiy corrections
- add additional modules
- Reviewing the XML file
- Entering metadata
- publishing the dataset
- Data Preparation
Data Access and Search
- Search via reBiND web interface
- Search via Biodiversity networks (GBIF)
Case Studies
- Case studies with single data sets from different providers
- General observations
Data Rescue (outdated software and hardware)
- software
- Identifying Unknown File Formats
- Conversion for selected file formats
- DataPerfect
- Paradox
- dBase
- Harvard Graphics
- Word 3 for DOS
- Excel to Access database
- Document new data formats for others
- hardware
- 3.5" Floppies
- 5.25 " Floppies
supporting data preparation
- Software Products
- Data Splitter
- Character Encoding Correcter
- Stand-alone Correction Manager
- supporting procedures
Technical Background
- eXist
- XQuery
- ABCD
- EML
