Difference between revisions of "Best Practice Handbook"
From reBiND Documentation
(→Data Archiving) |
(→Data Archiving) |
||
| Line 29: | Line 29: | ||
*** import from XML file system | *** import from XML file system | ||
*** Connect to BioCASE and upload XML | *** Connect to BioCASE and upload XML | ||
| − | ** | + | ** Validation and Corrections |
| − | *** default | + | *** Validation |
| − | *** modifiy corrections | + | *** Running the automated correction |
| − | ** | + | **** default correction (selecting existing correction module) |
| − | ** | + | **** modifiy corrections |
| − | ** | + | **** add additional modules |
| + | ** Reviewing the XML file | ||
| + | ** Entering metadata | ||
| + | ** publishing the dataset | ||
==Best Practice Documentation== | ==Best Practice Documentation== | ||
Revision as of 14:38, 11 June 2014
Contents
Introduction
- about reBiND
- how to use this book
System Installation
- Installing BioCASe Provider Software
- Installing eXist
- Installing reBiND Framework
- Configuring eXist/reBiND Framework
- Using a custom data format
- Using the Correction Tool
- Documentation of Correction Modules
- Writing Custom Correction Modules
- Using a different metadata format
Technical Background
- eXist
- XQuery
- ABCD
- EML
Data Archiving
- workflow
- Data Preparation
- prepare the content for ABCD mapping: resolve abbreviations, add units, concatenate atomised scientific name, additional information from data documentation, add metadata, denormalise
- ABCD Mapping (see BioCASE documentation) plus additional examples
- XML Export from BioCASE provider software (mention other like Pentaho Kettle?)
- import to reBiND Framework
- import from XML file system
- Connect to BioCASE and upload XML
- Validation and Corrections
- Validation
- Running the automated correction
- default correction (selecting existing correction module)
- modifiy corrections
- add additional modules
- Reviewing the XML file
- Entering metadata
- publishing the dataset
- Data Preparation
Best Practice Documentation
Data Rescue, Preparation
- data formats
- Identifying Unknown File Formats
- Conversion for selected file formats
- DataPerfect
- Paradox
- dBase
- Harvard Graphics
- Word 3 for DOS
- Excel to Access database
- Document new data formats for others
- hardware
- 3.5" Floppies
- 5.25 " Floppies
- preparation
Case Studies
Related Software Products
- Data Splitter
- Character Encoding Correcter
- Stand-alone Correction Manager
