Best Practice Handbook

From reBiND Documentation
Revision as of 14:14, 11 June 2014 by AgnesKirchhoff (talk | contribs) (supporting data preparation)
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Introduction

  • about reBiND
  • how to use this book

System Installation and Administration

  • Installation
  • Administration
    • Using a custom data format (?)
    • Documentation of Correction Modules
    • Writing Custom Correction Modules
    • Using a different metadata format

Data Archiving

  • Workflow
    • Data Preparation
      • Prepare the content for ABCD mapping: resolve abbreviations, add units, concatenate atomised scientific name, additional information from data documentation, add metadata, denormalise
      • ABCD Mapping (see BioCASE documentation) plus additional examples
    • XML Export from BioCASE provider software (mention other like Pentaho Kettle?)
    • Import to reBiND Framework
      • Import from XML file system
      • Connect to BioCASE and upload XML
    • Validation and Corrections
      • Validation
      • Running the automated correction
        • Default correction (selecting existing correction module)
        • Modifiy corrections
        • Add additional modules
    • Reviewing the XML file
    • Entering metadata
    • Publishing the dataset

Data Access and Search

  • Search via reBiND web interface
  • Search via Biodiversity networks (GBIF)

Case Studies

  • Case studies with single data sets from different providers
  • General observations

Data Rescue (outdated software and hardware)


Supporting data preparation

Technical Background

  • eXist
  • XQuery
  • ABCD
  • EML


FAQ

Glossary

References