Difference between revisions of "Best Practice Handbook"
From reBiND Documentation
(→Data Archiving) |
|||
| Line 16: | Line 16: | ||
==Data Archiving== | ==Data Archiving== | ||
| − | * | + | *Workflow |
** Data Preparation | ** Data Preparation | ||
| − | *** | + | ***Prepare the content for ABCD mapping: resolve abbreviations, add units, concatenate atomised scientific name, additional information from data documentation, add metadata, denormalise |
***ABCD Mapping (see BioCASE documentation) plus additional examples | ***ABCD Mapping (see BioCASE documentation) plus additional examples | ||
** XML Export from BioCASE provider software (mention other like Pentaho Kettle?) | ** XML Export from BioCASE provider software (mention other like Pentaho Kettle?) | ||
| − | ** | + | ** Import to reBiND Framework |
| − | *** | + | *** Import from XML file system |
*** Connect to BioCASE and upload XML | *** Connect to BioCASE and upload XML | ||
** Validation and Corrections | ** Validation and Corrections | ||
*** Validation | *** Validation | ||
*** Running the automated correction | *** Running the automated correction | ||
| − | **** | + | **** Default correction (selecting existing correction module) |
| − | **** | + | **** Modifiy corrections |
| − | **** | + | **** Add additional modules |
** Reviewing the XML file | ** Reviewing the XML file | ||
** Entering metadata | ** Entering metadata | ||
| − | ** | + | ** Publishing the dataset |
==Data Access and Search== | ==Data Access and Search== | ||
Revision as of 14:13, 11 June 2014
Contents
Introduction
- about reBiND
- how to use this book
System Installation and Administration
- Installation
- Installing BioCASe Provider Software
- Installing eXist
- Installing reBiND Framework
- Configuring eXist/reBiND Framework
- Administration
- Using a custom data format (?)
- Documentation of Correction Modules
- Writing Custom Correction Modules
- Using a different metadata format
Data Archiving
- Workflow
- Data Preparation
- Prepare the content for ABCD mapping: resolve abbreviations, add units, concatenate atomised scientific name, additional information from data documentation, add metadata, denormalise
- ABCD Mapping (see BioCASE documentation) plus additional examples
- XML Export from BioCASE provider software (mention other like Pentaho Kettle?)
- Import to reBiND Framework
- Import from XML file system
- Connect to BioCASE and upload XML
- Validation and Corrections
- Validation
- Running the automated correction
- Default correction (selecting existing correction module)
- Modifiy corrections
- Add additional modules
- Reviewing the XML file
- Entering metadata
- Publishing the dataset
- Data Preparation
Data Access and Search
- Search via reBiND web interface
- Search via Biodiversity networks (GBIF)
Case Studies
- Case studies with single data sets from different providers
- General observations
Data Rescue (outdated software and hardware)
- software
- Identifying Unknown File Formats
- Conversion for selected file formats
- DataPerfect
- Paradox
- dBase
- Harvard Graphics
- Word 3 for DOS
- Excel to Access database
- Document new data formats for others
- hardware
- 3.5" Floppies
- 5.25 " Floppies
supporting data preparation
- Software Products
- Data Splitter
- Character Encoding Correcter
- Stand-alone Correction Manager
- supporting procedures
Technical Background
- eXist
- XQuery
- ABCD
- EML
