Difference between revisions of "Best Practice Handbook"

From reBiND Documentation
Jump to: navigation, search
Line 5: Line 5:
 
==System Installation and Administration==
 
==System Installation and Administration==
 
* Installation
 
* Installation
** [[http://wiki.bgbm.org/bps/index.php/Installation|Installing BioCASe Provider Software]]
+
** [http://wiki.bgbm.org/bps/index.php/Installation Installing BioCASe Provider Software]
 
** Installing eXist
 
** Installing eXist
 
** Installing reBiND Framework
 
** Installing reBiND Framework

Revision as of 17:12, 11 June 2014

Introduction

System Installation and Administration

Data Archiving

  • Workflow
    • Data Preparation
      • Prepare the content for ABCD mapping: resolve abbreviations, add units, concatenate atomised scientific name, additional information from data documentation, add metadata, denormalise
      • ABCD Mapping (see BioCASE documentation) plus additional examples
    • XML Export from BioCASE provider software (mention other like Pentaho Kettle?)
    • Import to reBiND Framework
      • Import from XML file system
      • Connect to BioCASE and upload XML
    • Validation and Corrections
      • Validation
      • Running the automated correction
        • Default correction (selecting existing correction module)
        • Modifiy corrections
        • Add additional modules
    • Reviewing the XML file
    • Entering metadata
    • Publishing the dataset

Data Access and Search

  • Search via reBiND web interface
  • Search via Biodiversity networks (GBIF)

Case Studies

  • Case studies with single data sets from different providers
  • General observations

Data Rescue (outdated software and hardware)


Supporting data preparation

Technical Background

  • eXist
  • XQuery
  • ABCD
  • EML


FAQ

Glossary

References