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B-HIT Berlin Harvesting and Indexing Toolkit

Check out our publication on B-HIT : [Kelbert et al. 2015 PloS ONE].

B-HIT is based on the GBIF HIT. The old documentation from GBIF can be accessed here.

It has been actively extended for the BiNHum project, in order to support:

  • multiple identifications (without duplication)
  • unit associations
  • ABCD2.1
  • ABCD-Archives
  • extented multimedia fields
  • Supported schema and protocols:
    • ABCD: 2.06, 2.1, EFG, GGBN, GGBN Enviro, ABCD - Archive
    • DwC: DwC 1.0, 1.4, 1.4-Geospatial, 1.4-Curatorial, MaNIS 1.0, MaNIS 1.21, DwC Archive, DwC GGBN

Also, the technology got updated for security issues (latest Java Spring).

The latest version can be downloaded from our svn http://ww2.biocase.org/svn/binhum/trunk/BinHum/Harvester/

Overview.jpg

Table of Contents

Beginner's Guide
What B-HIT is all about.
Installation
How to install and use it.
Indexed fields
Detailed list of ABCD and DwC fields that are indexed.
Database
How the database is organized, how/why/what and where.
Index new elements
How to add new elements in the index and how to edit the parser